Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_I08
(852 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC027713-1|AAH27713.1| 804|Homo sapiens heterogeneous nuclear r... 31 5.3
BC014232-1|AAH14232.1| 756|Homo sapiens HNRPUL1 protein protein. 31 5.3
BC009988-1|AAH09988.2| 756|Homo sapiens HNRPUL1 protein protein. 31 5.3
BC002564-1|AAH02564.1| 856|Homo sapiens heterogeneous nuclear r... 31 5.3
AK127057-1|BAC86806.1| 752|Homo sapiens protein ( Homo sapiens ... 31 5.3
AK021455-1|BAB13831.1| 390|Homo sapiens protein ( Homo sapiens ... 31 5.3
AJ007509-1|CAA07548.1| 856|Homo sapiens E1B-55kDa-associated pr... 31 5.3
X62153-1|CAA44078.2| 808|Homo sapiens P1.h protein protein. 30 9.3
D38073-1|BAA07267.1| 808|Homo sapiens hRlf beta subunit (p102 p... 30 9.3
BC003509-1|AAH03509.2| 808|Homo sapiens minichromosome maintena... 30 9.3
BC001626-1|AAH01626.1| 808|Homo sapiens minichromosome maintena... 30 9.3
AY621074-1|AAT27321.1| 808|Homo sapiens MCM3 minichromosome mai... 30 9.3
AY032603-1|AAK56392.1| 676|Homo sapiens cervical cancer proto-o... 30 9.3
AL034343-2|CAD92644.1| 328|Homo sapiens minichromosome maintena... 30 9.3
AL034343-1|CAB75298.1| 808|Homo sapiens minichromosome maintena... 30 9.3
>BC027713-1|AAH27713.1| 804|Homo sapiens heterogeneous nuclear
ribonucleoprotein U-like 1 protein.
Length = 804
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 757 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 787
>BC014232-1|AAH14232.1| 756|Homo sapiens HNRPUL1 protein protein.
Length = 756
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 709 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 739
>BC009988-1|AAH09988.2| 756|Homo sapiens HNRPUL1 protein protein.
Length = 756
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 709 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 739
>BC002564-1|AAH02564.1| 856|Homo sapiens heterogeneous nuclear
ribonucleoprotein U-like 1 protein.
Length = 856
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 809 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 839
>AK127057-1|BAC86806.1| 752|Homo sapiens protein ( Homo sapiens
cDNA FLJ45114 fis, clone BRAWH3034775, highly similar
to Homo sapiens E1B-55kDa-associated protein 5
(E1B-AP5). ).
Length = 752
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 705 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 735
>AK021455-1|BAB13831.1| 390|Homo sapiens protein ( Homo sapiens
cDNA FLJ11393 fis, clone HEMBA1000591, weakly similar to
PTB-ASSOCIATED SPLICING FACTOR. ).
Length = 390
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 343 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 373
>AJ007509-1|CAA07548.1| 856|Homo sapiens E1B-55kDa-associated
protein protein.
Length = 856
Score = 31.1 bits (67), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 511 PTPSHPQYEQYAGP--QYGAPQHGYDPYYGH 597
P PS+ QY+QYA QY Q + PYYG+
Sbjct: 809 PQPSYNQYQQYAQQWNQYYQNQGQWPPYYGN 839
>X62153-1|CAA44078.2| 808|Homo sapiens P1.h protein protein.
Length = 808
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
>D38073-1|BAA07267.1| 808|Homo sapiens hRlf beta subunit (p102
protein) protein.
Length = 808
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
>BC003509-1|AAH03509.2| 808|Homo sapiens minichromosome maintenance
complex component 3 protein.
Length = 808
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
>BC001626-1|AAH01626.1| 808|Homo sapiens minichromosome maintenance
complex component 3 protein.
Length = 808
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
>AY621074-1|AAT27321.1| 808|Homo sapiens MCM3 minichromosome
maintenance deficient 3 (S. cerevisiae) protein.
Length = 808
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
>AY032603-1|AAK56392.1| 676|Homo sapiens cervical cancer
proto-oncogene 5 protein.
Length = 676
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
>AL034343-2|CAD92644.1| 328|Homo sapiens minichromosome maintenance
complex component 3 protein.
Length = 328
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 23 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 78
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 79 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 113
>AL034343-1|CAB75298.1| 808|Homo sapiens minichromosome maintenance
complex component 3 protein.
Length = 808
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 258 AYDTPSYDHEEQEDNEISLXQAGLVERRSLGCEGETERIKSI*QSPRREHALHQIKAKGT 437
A D P++ E+Q+D +I L+ G + + E++ S + H IK T
Sbjct: 528 ATDDPNFSQEDQQDTQIYEKHDNLLH----GTKKKKEKMVSAAFMKKYIHVAKIIKPVLT 583
Query: 438 AEKSYGARQNY*RCRQKEDLLSLSANAVASTIRTV 542
E + + Y R R ++ + S +A T RT+
Sbjct: 584 QESATYIAEEYSRLRSQDSMSSDTARTSPVTARTL 618
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,619,328
Number of Sequences: 237096
Number of extensions: 1892959
Number of successful extensions: 4003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3999
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -