Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I08
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   1.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   8.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   8.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 216 YSDLDEEDQHLFRAAYDTPSYDHEEQEDNEISLXQAGLVER 338
           Y    +EDQH   A   T SYD+   E + ++     L+ +
Sbjct: 109 YPPFWDEDQHRLYAQIKTGSYDYPSPEWDTVTPEAKNLINQ 149


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 272 GSVVCSSEQMLIFFVQIRISRHVSW 198
           GSVVCS  Q ++F ++     +V+W
Sbjct: 163 GSVVCSLPQTIVFHLETH--PNVTW 185


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 135 YYSITMIAKLVIGILFLNAVSP 200
           YY++T I   ++GI+ +  + P
Sbjct: 141 YYTVTTILAAIVGIVMVLIIHP 162


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 177 LFLNAVSPRHVPRYSDLDEEDQ-HLFRAAYD---TPSYDHEEQEDNEISLXQAGLVERRS 344
           LF      +H+P ++ L  EDQ  L RA ++     S+ H   +  +  +   G+   R+
Sbjct: 242 LFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRN 301


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 177 LFLNAVSPRHVPRYSDLDEEDQ-HLFRAAYD---TPSYDHEEQEDNEISLXQAGLVERRS 344
           LF      +H+P ++ L  EDQ  L RA ++     S+ H   +  +  +   G+   R+
Sbjct: 242 LFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRN 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,026
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)