Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_I06
(952 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.078
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.078
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 31 0.24
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.73
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.73
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.078
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -1
Query: 511 IPP-PPPXXXKKXXXPPXGXXPFPPPPXVPXXPPP 410
+PP PPP P G P PPP P P P
Sbjct: 1188 VPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = -1
Query: 505 PPPPXXXKKXXXPPXGXXPFPPPPXVPXXPPP 410
P P P G P PPP P P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = -1
Query: 508 PPPPPXXXKKXXXPPXGXXPFPPPPXVPXXPPP 410
P P P P G P P P +P P P
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -1
Query: 511 IPPPPPXXXKKXXXPPXGXXPFPPPPXVPXXPPPXP 404
IPP P PP P P P V P P P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.078
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -1
Query: 505 PPPPXXXKKXXXPPXGXXPFPPPPXVPXXPPPXP 404
PPPP P P PPP + PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 29.9 bits (64), Expect = 0.55
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -3
Query: 515 KXPPPPPPXRXKXXXPPXXXXPFSSPPXGPXXXPPXPXXXKKGFVXPXFXXXXPP 351
K PPPPPP P P PP P P P G PP
Sbjct: 730 KSPPPPPPA---VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 0.96
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Frame = -1
Query: 511 IPPPPPXXXKKXXXPPXGXXPFPPPPXV----PXXPPPXPXXXKKG 386
IP PPP PP PPPP V P PPP P G
Sbjct: 749 IPVPPPAPIMGGPPPP------PPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +2
Query: 530 PPPPRGXGXXXXGAPPXPPXKXVEAGVXGGGXXXSPPXGGE 652
PPPP G G PP PP + GG +P E
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSA--GGSRYYAPAPQAE 800
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -3
Query: 509 PPPPPPXRXKXXXPPXXXXPFSSPPXGPXXXPPXP 405
PPPPPP PP P + G P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 572 GPPXXXXPXPGGGGVFFXXKXPPPPPP 492
G P P PG G PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGA--GPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Frame = -3
Query: 515 KXPPPPPPXRXKXXXPPXXXXPFSSPPXGPXXXPPXPXXXKKGFV--XPXFXXXXPPXXX 342
+ PPPPPP R PP +S P PP P G + P PP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPP---PPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 341 XFFFXXGXFPPP 306
G PPP
Sbjct: 367 RSAPSTGRQPPP 378
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -3
Query: 545 PGGGGVFFXXKXPPPPPPXRXKXXXPPXXXXPFSSPPXGPXXXPP 411
P G G PPPPPP P S+PP P P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 826 PPXSPXXXPXXPPRXPPWXPSXXXQPG-XXXKXXPPPXPP 942
PP +P P P PP PS P PP PP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Frame = -1
Query: 508 PPPPPXXXKKXXXPPX--GXXPFPPPPXVPXXPPPXP 404
P PP PP G PP P PPP P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 509 PPPPPPXRXKXXXPPXXXXPFSSPPXGP 426
PPPPPP PP + PP GP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.73
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 508 PPPPPXXXKKXXXPPXGXXPFPPPPXVPXXPPP 410
P P + PP P PPPP + PPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 29.1 bits (62), Expect = 0.96
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 826 PPXSPXXXPXXPPRXPPWXPSXXXQPGXXXKXXPPPXP 939
PP P PP P PS P PPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -3
Query: 509 PPPPPPXRXKXXXPPXXXXPFSSPPXGPXXXPPXP 405
P PP R + PP P +PP P PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAP--TPPPPPMSVPPPP 1718
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = -1
Query: 502 PPPXXXKKXXXPPXGXXPFPPPPXVPXXPPPXP 404
PP PP P P P +P PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 509 PPPPPPXRXKXXXPPXXXXPFSSPPXGPXXXPPXP 405
P PPPP PP P P GP PP P
Sbjct: 1705 PTPPPP--PMSVPPPPSAPPM---PAGPPSAPPPP 1734
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.73
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +1
Query: 406 GXGGXXXGPXGGEEKGXXXXGGXXXFXRXGGGGGGXXXXKKTPPPPGXGXXXXGGP 573
G GG GP GG E G GG GG GGG P G G GGP
Sbjct: 222 GHGGFGGGP-GGFEGGPGGFGGGP-----GGFGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 29.5 bits (63), Expect = 0.73
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 GXGGGXXGTXGG-GGKGXXPXGGXXXFXXXXGGGGGXF 515
G GGG G GG GG G P GG GGG G F
Sbjct: 225 GFGGGPGGFEGGPGGFGGGP-GGFGGGLGGFGGGPGGF 261
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 393 FXXXGXGGGXXGTXGGGGKGXXP-XGGXXXFXXXXGGG 503
F G GG G GGG G P GG F G G
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = -1
Query: 469 PPXGXXPFPPPPXV--PXXPPPXP 404
PP P PPPP P PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = -1
Query: 508 PPPPPXXXKKXXXPPXGXXPFPPPPXVPXXPPPXPXXXKK 389
PPPPP PP G F PP P PPP P KK
Sbjct: 9 PPPPP--------PPPG---FEPPSQPP--PPPPPGYVKK 35
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 569 PPXXXXPXPGGGGVFFXXKXPPPPPPXRXK 480
PP P P G + PPPPPP K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -3
Query: 941 GGXGGGXXXLFXPGCXXXEGXQGGXRGGXXGXXXGLXGG 825
GG GGG G G +GG RGG G G GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGG-RGGARGGRGGSSGG 63
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = -3
Query: 941 GGXGG--GXXXLFXPGCXXXEGXQGGXRGGXXGXXXGLXGG 825
GG GG G F G G +GG RGG G G GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 405 GXGGGXXGTXGGGGKGXXPXGGXXXFXXXXGGGGG 509
G GGG G GGG G GG GG GG
Sbjct: 27 GFGGGRGGARGGGRGG--ARGGRGGRGGARGGRGG 59
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -3
Query: 941 GGXGGGXXXLFXPGCXXXEGXQGGXRGGXXGXXXGLXG 828
GG GG G G +GG RGG G G G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 911 FXPGCXXXEGXQGGXRGGXXGXXXGLXGG 825
+ PG G G RGG G G GG
Sbjct: 3 YTPGSRGGRGGSRGGRGGFNGGRGGFGGG 31
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = -3
Query: 509 PP--PPPPXRXKXXXPPXXXXPFSS-PPXGPXXXPPXP 405
PP P PP PP P S PP P PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = -1
Query: 508 PP--PPPXXXKKXXXPPXGXXPFPP-PPXVPXXPPPXP 404
PP P P + PP P P PP P PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 941 GGXGGGXXXLFXPGCXXXEGXQGGXRGGXXGXXXG 837
GG GGG F G G +GG RGG G G
Sbjct: 160 GGFGGGSRGGFGGGSRG--GSRGGFRGGSRGGFRG 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,408
Number of Sequences: 5004
Number of extensions: 37113
Number of successful extensions: 307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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