Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I04
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    32   0.092
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    30   0.37 
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   6.0  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   8.0  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +2

Query: 557 LEKGCYASLEYNKNTIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITN 736
           L   C+ +LEY K   V        L L+Y +L E+P      FS+ +K+L +S N++ N
Sbjct: 818 LGNDCFTALEYFKCLKV--------LNLSYNYLTEIPSKFFQNFSD-LKHLFVSGNELAN 868

Query: 737 L 739
           L
Sbjct: 869 L 869


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 632  LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPL--VHFFHLSSLIADXI 790
            L LA   L EVP+ I     N ++ LD+SHN I++++ L  +   H   L+ + I
Sbjct: 872  LELANVQLKEVPKYIATSMPN-LRVLDLSHNYISDIESLKPLQMIHRLYLVGNRI 925



 Score = 29.5 bits (63), Expect = 0.65
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 686 FSN--HIKYLDISHNKITNLDPLVHFFHLSSLIAD 784
           FSN  +++YLDIS+N++ +L  L    HL  L  D
Sbjct: 664 FSNLLNLQYLDISYNQLEDLTGLSSLIHLRELKVD 698


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 777 INDDKWKK*TRGSKFVILLWLISKYFM 697
           + D  W + T GS F++ +W++   F+
Sbjct: 248 LTDPIWNQYTAGSWFMLFIWIVYSIFL 274


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 647 EWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPLVHFFHLS 769
           EWL+   RT+  K  ++I   +  H++   L  +V    LS
Sbjct: 213 EWLFRKTRTVAQKTDSNILLANAWHHRADALTGMVSLLALS 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,641
Number of Sequences: 5004
Number of extensions: 71106
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)