Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_I04
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0205 - 41978437-41980599,41980805-41981215 31 1.2
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 31 1.6
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 30 2.1
12_01_0718 + 6339982-6342981 30 2.8
03_05_0092 - 20714102-20717902 29 3.6
03_06_0678 - 35480711-35484658 29 4.8
01_01_0205 + 1764034-1767601,1767934-1767944 29 4.8
08_02_1435 + 27079184-27082006 29 6.4
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 6.4
03_06_0680 - 35497868-35497884,35498058-35501961 28 8.4
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 28 8.4
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 527 PSL*NQHTTYLEKGCYASLEYNKNTIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKY 706
P+L N T + Y E+N VD + + L + + +F H++Y
Sbjct: 498 PNLPNLRTLLSLEEQYPLYEWN----VDFSKCKSLRVLDLHGFHSSQVMLPSRFLEHLRY 553
Query: 707 LDISHNKITNL-DPLVHFFHLSSL 775
LD+S++ IT++ D +V+ ++L +L
Sbjct: 554 LDLSNSWITSIPDDVVYLYNLQTL 577
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 615 KRTLQN*LWPMNGCMKCQGQ 674
K TLQN W NGC C GQ
Sbjct: 176 KGTLQNLYWKANGCSACSGQ 195
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 632 LTLAYEWLYE-VPRTIVDKFSNHIKYLDISHNKITNLDP 745
L+L+Y WL +P ++V+ SN ++ LDISHN +T P
Sbjct: 516 LSLSYNWLSSYIPASLVN-LSNLLQ-LDISHNNLTGALP 552
>12_01_0718 + 6339982-6342981
Length = 999
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 599 TIVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNL--DPL----VHFF 760
TI+ + + T L L+Y + V K S + L++SHNK T+ DPL + FF
Sbjct: 512 TILRHLPEITSLDLSYNQIRGAIPQWVWKTSGYFSLLNLSHNKFTSTGSDPLLPLNIEFF 571
Query: 761 HLS 769
LS
Sbjct: 572 DLS 574
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 608 DNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITN 736
D +D T LT LY+ P+ +VDKF ++ L+IS IT+
Sbjct: 1042 DGFQDLTALTDLS--LYDCPKLLVDKFHTSLRKLEISECFITH 1082
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 683 KFSNHIKYLDISHNKITNL-DPLVHFFHLSSL 775
K+ +H++YLD+S++KI L + + +HL +L
Sbjct: 593 KYLHHLRYLDLSYSKIEALPEDISILYHLQTL 624
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 29.1 bits (62), Expect = 4.8
Identities = 9/27 (33%), Positives = 22/27 (81%)
Frame = +2
Query: 662 VPRTIVDKFSNHIKYLDISHNKITNLD 742
+P+ I +K+S+ + +L++SHN +T+++
Sbjct: 739 IPKWIWEKWSSSVVHLNLSHNMLTSME 765
>08_02_1435 + 27079184-27082006
Length = 940
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +2
Query: 632 LTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKITNLDPLVHFFHLSSLIA 781
L L+ L V T + + SN + YLDIS NK+ +HF +LS L A
Sbjct: 351 LDLSENSLSGVLPTSISRLSN-LTYLDISFNKLIGELSELHFTNLSRLDA 399
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 602 IVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKI 730
+ D + K+ L++ L E T V +F +H+ YLD+SHN I
Sbjct: 203 LFDIAKPMAKIDLSWNRL-EFDMTKV-RFPHHLNYLDLSHNSI 243
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 683 KFSNHIKYLDISHNKITNL-DPLVHFFHLSSL 775
K+ +H++YLD+S +KI L + + +HL +L
Sbjct: 602 KYLHHLRYLDLSESKIKALPEDISILYHLQTL 633
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 605 VDNEEDSTKLTLAYEWLYEVP--RTIVDKFSNHIKYLDISH 721
V E+D +L +E + P + I+ +SNH+K DI H
Sbjct: 535 VVGEDDLMELLCTFEDIRNAPFGKEIMQAYSNHLKLRDIDH 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,730,734
Number of Sequences: 37544
Number of extensions: 377418
Number of successful extensions: 778
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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