Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I04
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   8.4  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 694 IGKFIHYCPWHFIQPFIG 641
           IG  +H+  WH + PF G
Sbjct: 203 IGINLHHWHWHLVYPFEG 220


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 399 DIMASVMSVIESTTISLDRSTEI 331
           D+M S  S++    ISLDR   I
Sbjct: 105 DVMCSTASILNLCAISLDRYIHI 127


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +2

Query: 602 IVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKI 730
           + D+E+    +T  + W Y +P   +  F + +     +H K+
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKM 253


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +2

Query: 602 IVDNEEDSTKLTLAYEWLYEVPRTIVDKFSNHIKYLDISHNKI 730
           + D+E+    +T  + W Y +P   +  F + +     +H K+
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKM 253


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 32  NP*DFETLDCRCQKTKYLPFAK 97
           NP D ++L C  Q TK+  F K
Sbjct: 112 NPYDRDSLSCWLQMTKHHNFIK 133


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 756 K*TRGSKFVILLWLIS 709
           K +R  KF+I++WL++
Sbjct: 167 KLSRAVKFIIVIWLLA 182


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 293 IHASCSSVP 319
           +HASC+SVP
Sbjct: 14  VHASCASVP 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,589
Number of Sequences: 438
Number of extensions: 4922
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)