Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I03
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    27   3.5  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   6.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.1  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.1  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 724 EDRPLKLVLNLIKFIRTYETANIVFKKKMSQETHKLSXAR-FGRPI 858
           +D+P  + L  +KF R       ++     +ET K+S    FG P+
Sbjct: 232 DDQPTIIPLRFVKFQRVNSLVIFIYSNVGEEETTKISRLELFGEPV 277


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 242 SSWVSGLNLLHLTXGARSPQQRLHF 168
           S W S LNLL +  G R      HF
Sbjct: 127 SQWASNLNLLGIPTGLRDSDATTHF 151


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 249  TSSSRSCLAASPVLPNHYVLGDHRYVPSH 335
            TS+ RS  AAS   P  Y  GD  ++P +
Sbjct: 1094 TSAGRSSTAASTSAPLTYPAGDRSHIPGN 1122


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 566 TVLNLSHTSGYFNLIYNLYFIHNSR 640
           T    S  + Y+N  +NLYFIH S+
Sbjct: 473 TAFPTSRQNAYYNDPWNLYFIHFSK 497


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 82  NFLFNCTNNQGCRCFNIGIRLFF 150
           + L   + NQ C+ FNIG +++F
Sbjct: 256 HLLLQSSENQACKFFNIGPQVYF 278


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 162  PFPNKKQAYSNIKTTASLIICTIK*KVLKFVSTGR 58
            P PN+   +SN+ +  S ++ + +   LKF+ST R
Sbjct: 1058 PLPNQPLLHSNLHSPVSPVVDSNEDSRLKFLSTQR 1092


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,593
Number of Sequences: 5004
Number of extensions: 64045
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)