Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I03
         (877 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J03569-1|AAA35536.1|  529|Homo sapiens protein ( Human lymphocyt...    36   0.25 
M21904-1|AAA35489.1|  529|Homo sapiens protein ( Human 4F2 glyco...    35   0.34 
J02939-1|AAA52497.1|  529|Homo sapiens MDU1 protein.                   35   0.34 
BC003000-1|AAH03000.2|  568|Homo sapiens solute carrier family 3...    35   0.34 
BC001061-1|AAH01061.2|  630|Homo sapiens solute carrier family 3...    35   0.34 
AB018010-1|BAA84649.1|  529|Homo sapiens 4F2 heavy chain protein.      35   0.34 
J02769-1|AAA51540.1|  529|Homo sapiens H4F2 protein.                   34   0.78 

>J03569-1|AAA35536.1|  529|Homo sapiens protein ( Human lymphocyte
           activation antigen 4F2 large subunit mRNA, complete cds.
           ).
          Length = 529

 Score = 35.5 bits (78), Expect = 0.25
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 50  DEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 109

Query: 367 AEVVTNEMPSVPPVH 411
            E+   +     P++
Sbjct: 110 RELPAQKWWHTGPLY 124


>M21904-1|AAA35489.1|  529|Homo sapiens protein ( Human 4F2
           glycosylated heavy chain (4F2HC) antigen gene, exon 9.
           ).
          Length = 529

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 50  DEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 109

Query: 367 AEV 375
            E+
Sbjct: 110 REL 112


>J02939-1|AAA52497.1|  529|Homo sapiens MDU1 protein.
          Length = 529

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 50  DEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 109

Query: 367 AEV 375
            E+
Sbjct: 110 REL 112


>BC003000-1|AAH03000.2|  568|Homo sapiens solute carrier family 3
           (activators of dibasic and neutral amino acid transport
           protein.
          Length = 568

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 89  DEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 148

Query: 367 AEV 375
            E+
Sbjct: 149 REL 151


>BC001061-1|AAH01061.2|  630|Homo sapiens solute carrier family 3
           (activators of dibasic and neutral amino acid transport
           protein.
          Length = 630

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 151 DEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 210

Query: 367 AEV 375
            E+
Sbjct: 211 REL 213


>AB018010-1|BAA84649.1|  529|Homo sapiens 4F2 heavy chain protein.
          Length = 529

 Score = 35.1 bits (77), Expect = 0.34
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 50  DEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 109

Query: 367 AEV 375
            E+
Sbjct: 110 REL 112


>J02769-1|AAA51540.1|  529|Homo sapiens H4F2 protein.
          Length = 529

 Score = 33.9 bits (74), Expect = 0.78
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 DRAPXVRCRRFRPLTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQC 366
           D A      +F  L++EE+L+      W R ++ L+++FW   + M    +  I+   +C
Sbjct: 50  DEAEAAAPAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRC 109

Query: 367 AEV 375
            E+
Sbjct: 110 REL 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,264,168
Number of Sequences: 237096
Number of extensions: 1996794
Number of successful extensions: 3935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3888
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)