Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I03
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 312 DHRYVP---SHHHLHFDAVAVRRS 374
           +HR +P   SHHHLH   V  ++S
Sbjct: 63  EHRDLPIYQSHHHLHHHQVLYQQS 86


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 410 CTGGTLGISFVTTSAH 363
           CT GTLGI F   S +
Sbjct: 493 CTAGTLGIIFQAPSLY 508


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 159 FPNKKQAYSNIKTTASLII 103
           F N+KQ+Y +I TT++  I
Sbjct: 100 FVNEKQSYFHIATTSNEFI 118


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 159 FPNKKQAYSNIKTTASLII 103
           F N+KQ+Y +I TT++  I
Sbjct: 100 FVNEKQSYFHIATTSNEFI 118


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 466 FPNSLIKRKLSILMGLMRDARAER 395
           FP S+ +   +++  L RD  AER
Sbjct: 586 FPRSITRNATALIKKLCRDNPAER 609


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 159 FPNKKQAYSNIKTTASLII 103
           F N+KQ+Y +I TT++  I
Sbjct: 39  FVNEKQSYFHIATTSNEFI 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,126
Number of Sequences: 438
Number of extensions: 4677
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)