Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I01
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    28   1.5  
SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce...    26   8.0  

>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 257 QVRMLCRDIVKENESGNITFDS 322
           Q R L +DI   NE GN+ FDS
Sbjct: 92  QERCLLKDICHVNEDGNVAFDS 113


>SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = +2

Query: 146 KMTVNNTIAHQRLILSGDXXXXXXXXXXXXXXCGWRDQVRMLCRDIVKENESGNITFDSL 325
           KMT    +  ++L  +GD              CGW  Q+R   R IV  N    I F  L
Sbjct: 9   KMTTEKIV--EQLYETGDYERLANELEYKLESCGWTTQLRDYTRGIV--NSDSKIDFQKL 64



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 360 VPDSVKKELLQKIKTHLL 413
           +PDSVK +LL+ IKT +L
Sbjct: 76  IPDSVKMDLLKDIKTCVL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,952
Number of Sequences: 5004
Number of extensions: 38890
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)