Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_I01
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.5  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 555 YSYT**N*NKDNNCSKLIPNPDFSLKIILKI 463
           Y Y   N N +NNC KL  N ++  +I + +
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 555 YSYT**N*NKDNNCSKLIPNPDFSLKIILKI 463
           Y Y   N N +NNC KL  N ++  +I + +
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 555 YSYT**N*NKDNNCSKLIPNPDFSLKIILKI 463
           Y Y   N N +NNC KL  N ++  +I + +
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 117 IFPICFLIFN 88
           +FP+CF+ FN
Sbjct: 411 VFPVCFVCFN 420


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 117 IFPICFLIFN 88
           +FP+CF+ FN
Sbjct: 411 VFPVCFVCFN 420


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 555 YSYT**N*NKDNNCSKLIPNPDF 487
           Y Y   N N +NNC KL  N ++
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINY 118


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 117 IFPICFLIFN 88
           +FP+CF+ FN
Sbjct: 349 VFPVCFVCFN 358


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 125 TQRHPWQKMTVNNT 166
           + +H W +M++NNT
Sbjct: 124 SDQHKWFQMSINNT 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,204
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)