Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H20
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    28   1.4  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   4.4  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 379 SGISSLQDPHLLSKPLNALGVLTSKG-QKVPDAIGLEPKPGPVGGSSDEK 525
           SG   + DP LL + + ALGV    G Q+  DA  +   P   GG   E+
Sbjct: 505 SGAQRIHDPELLVERMKALGVSPDVGLQQYIDAFAIGCPPHAGGGIGLER 554


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
 Frame = +1

Query: 238 VSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNLGLNDLSEALGLNSGISSLQDPHLLS 417
           + G +  +      S +HAGL PG+ +  G+L   G   ++   G+     S  D  +  
Sbjct: 316 LKGGIIEVSASLAGSGEHAGLWPGIWTL-GNLARPGY--MATTDGVWPYAYSQCDVGITP 372

Query: 418 KPLNALGVLTSKGQKVPDAIGL-EPKPGPVGGSSDEKPALGLIDHSDE 558
              +  G+    GQK+P+ + L E  P P  G     P + +++ S E
Sbjct: 373 NQSSYDGISYLPGQKLPNCVCLNEDHPSP--GVGRGAPEIDILEGSTE 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,277
Number of Sequences: 5004
Number of extensions: 62448
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)