Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H18
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 69 9e-13
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 7e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 30 0.50
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 28 2.0
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.7
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 2.7
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 2.7
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 3.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.2
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 6.2
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 26 6.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 6.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 8.2
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 8.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 8.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 8.2
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 68.9 bits (161), Expect = 9e-13
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Frame = +3
Query: 177 KSEEI-KMTEDKEVTVETNGQEENAKTENSEDETELDIA-----IIRQVEYYFGDVNLHR 338
K+EE K+ E ++ T +EE TE ED+ + D++ +++QVE+YF D NL
Sbjct: 25 KAEEAGKVVESQKDTTSEEKKEET--TEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPH 82
Query: 339 DKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 467
DKFL + +DGWVP++ + F R+ + + + I NAL KS
Sbjct: 83 DKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKS 124
Score = 50.0 bits (114), Expect = 4e-07
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +1
Query: 478 LLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVE 657
LLEV E +KVRR PL ++ K + RS+Y KGF D D + K F+E
Sbjct: 127 LLEVDEAGEKVRRMI--PLVRVDN---KSVMERSVYCKGFG-DEKDDTQIALEKFFEENA 180
Query: 658 NVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKFM---NAKGHKYGDNELLHSGRK 816
I + + K+ FKGSVF FK + A KF+ K+G++EL +K
Sbjct: 181 GPISAVRMRRDDDKK-FKGSVFVEFKEPDVANKFLEKVKTAPLKWGEDELTIMSKK 235
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.0 bits (104), Expect = 7e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 300 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKS 467
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAACKAS 386
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +3
Query: 168 CFLKSEEIKMTEDKEVTVET-NGQEENA---KTENSEDETE--LDIAIIRQVEYYFGDVN 329
CF+ ++ K + T G+ EN TE E+E E + + + ++ N
Sbjct: 168 CFISPQKDNQGFSKSKHLSTYEGETENGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFN 227
Query: 330 LHRDKFLQEQIKLDD 374
HR++FL E + +D+
Sbjct: 228 SHRERFLTEHVNMDE 242
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -3
Query: 523 LDYVSLFCYLQKPPIIQLVDLLRAFAMTSVSSVSLARRLNFVRISNG 383
L +S+F YL+KP ++L +R + +++ L + +F+ + +G
Sbjct: 127 LSAISIFGYLEKPVFVELARHIRTQRVAEGNTIYLGEQSSFILVVDG 173
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 433 TQMSSQMPLTNLRAGLLEVSEDNKKVRRNPEQPLPEMNEELRKE 564
+++S +PL+ L L S+ NKK R P +PL E + KE
Sbjct: 284 SELSIDVPLSMLNRSLANNSQKNKK--RTPNKPLQESSINSVKE 325
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/103 (19%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = +3
Query: 177 KSEEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQE 356
+S + +K ++ E ++++AK E+ + + E+ ++ ++ +F +L + Q+
Sbjct: 877 QSRNSEAENEKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQD 933
Query: 357 Q-IKLDDGWVPLEILTKFNRLAKLTEDTDVIANALNKSTSWII 482
I + P +TKFN+ K+ T + A +S ++ +
Sbjct: 934 TVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFM 976
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 580 IYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQAEKF 759
++ G + + D L +YF+QF EV + + R ST R +G F TFK + +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMR---DSTTGR-SRGFGFLTFKNPKCVNEV 220
Query: 760 MNAKGHKYG 786
M+ + H G
Sbjct: 221 MSKEHHLDG 229
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 622 LLNYFKQFQEVENVI-MRRYVEKSTKKRLFKGSVFATFKTREQAEKFM 762
LLN+FK+++ VE + + R + + K F VF TF+++ + E M
Sbjct: 161 LLNFFKKYRSVERIASLSRSISEFQKS--FYEQVFDTFQSQFKKESGM 206
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 509 TFLLSSETSNN--PARRFVKGICDDICVLCQFG-KAIEF 402
+F+L + + + P RR++ G+ DI +C++ K I+F
Sbjct: 392 SFILENRSKSKLAPVRRYLSGLVGDILNICEYNIKLIDF 430
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +1
Query: 571 NRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTREQA 750
N +++ + A DDL N+F +++ ++ E +G F TF E A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGEN----RGYGFVTFSMLEDA 59
Query: 751 EK 756
++
Sbjct: 60 QR 61
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 499 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 615
N V R N++ KE+ NR + KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 144 LTSKPQ*TCFLKSEEIKMTEDKEVT-----VETNGQEENAKTENSEDETE 278
+ S+P+ LK+EE T+D VT V +NG+ A +E+ + E
Sbjct: 484 IKSEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVLE 533
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 183 EEIKMTEDKEVTVETNGQEENAKTENSEDE 272
E + ED V + +E N + EN+EDE
Sbjct: 460 ESNALVEDTSVDISATLEEANTQQENAEDE 489
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 583 YAKGFAKDASLD-DLLNYFKQFQEVENVIMRRYVEKSTKKRLFKGSVFATFKTRE 744
Y K K+ + D + L+YF++F + V +R Y ++ K F+ ++F + E
Sbjct: 983 YTKKNPKEPTADVNSLSYFEKFFVLFVVNLRHYFQERMKALKFRSTLFGDLEILE 1037
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 183 EEIKMTEDKEVTVETNGQEENAKTENSEDETEL 281
EE ++ ED++V +ET+ +E K +TE+
Sbjct: 248 EEDEVAEDEDVVLETSISQEEEKKNIENPDTEV 280
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 406 SIALPN*QRTQMSSQMPLTNLRAGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIY 585
S + P QR + ++ PLT +EV DN ++R+N + N +L + + +S
Sbjct: 467 SASEPRSQREDLHAE-PLTYFNQSNVEV--DNVELRKNTQPSSDAANRDLYQVLPEKSTN 523
Query: 586 AKGF 597
GF
Sbjct: 524 ISGF 527
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 373 SSNFICSCRNLSRC 332
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 177 KSEEIKMTEDKEVTVETNGQEENAKTENSEDETELD 284
K E+ E+ E + N +EE + ++ EDE + D
Sbjct: 93 KKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDED 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,529
Number of Sequences: 5004
Number of extensions: 64873
Number of successful extensions: 223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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