Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H12
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.52 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 29/106 (27%), Positives = 35/106 (33%), Gaps = 6/106 (5%)
 Frame = +3

Query: 597 PPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCEPP----R*TXXFPAXXLRXP 764
           PP  PP R     ++  P      P P          R  PP    R     PA     P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 765 G--AXHXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXPGXPPRXP 896
           G  A   P  G + + + P          PP+ PPS  P  PP  P
Sbjct: 397 GRSAPALPPLGNASRTSTP------PVPTPPSLPPSAPPSLPPSAP 436



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 28/98 (28%), Positives = 31/98 (31%)
 Frame = +3

Query: 594 PPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCEPPR*TXXFPAXXLRXPGAX 773
           PPP  P    P    L N       P PT   PP       P       P+  +  P A 
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPT---PPSLPPSAPPSLPPSAPPSLPMGAPAAP 447

Query: 774 HXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXPGXPP 887
             P    S   A PL     G    P  PP+  P  PP
Sbjct: 448 PLP---PSAPIAPPL---PAGMPAAPPLPPA-APAPPP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,466
Number of Sequences: 5004
Number of extensions: 19426
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)