Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H12
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 32 0.55
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 31 0.95
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 31 1.3
12_02_1174 - 26696869-26698191 31 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 28 2.0
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 30 2.9
06_02_0126 + 12130409-12130532,12131015-12131373 29 3.8
06_01_0178 + 1386981-1387505 29 5.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.9
07_03_1751 - 29215074-29216270 28 8.9
>02_01_0302 - 2021221-2023305
Length = 694
Score = 32.3 bits (70), Expect = 0.55
Identities = 32/122 (26%), Positives = 38/122 (31%), Gaps = 5/122 (4%)
Frame = +3
Query: 537 PXKGXXXKRXPXXXNLXXGPPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCE 716
P +G P + PP PP P + +P P PT P V
Sbjct: 509 PPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRP-DVRFAP 567
Query: 717 PPR*TXXFPAXXLRXPGAXHXPGSG----XSQKXAXPLXFXXRGXXDPPNXPPS-XXPGX 881
PP P+ G+ P SG Q A P G P PPS P
Sbjct: 568 PPGSYGPIPSTP-PSSGSPPSPSSGYQPPSGQPGASPPTQHVPGAGTPTTTPPSHSHPST 626
Query: 882 PP 887
PP
Sbjct: 627 PP 628
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 31.5 bits (68), Expect = 0.95
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Frame = +2
Query: 329 GGXVRGXXWEGXPGXXXSXNGRGXGGSAHXXXSPRXGXRXDGHRANGSAXXGG-GXXRXX 505
GG RG G G S GRG GG S G R + S GG G
Sbjct: 70 GGGGRGYGGGGGGGGYESGGGRGYGGGGRGYESGGGRGPGGGGRGHESGGGGGRGGNVWA 129
Query: 506 KPGXEHXGGTA 538
+PG G A
Sbjct: 130 QPGRGRGGAPA 140
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Frame = -1
Query: 534 VPPICSXPGFXXLXXPPPXXADPFARXP--SXRXPXLG-EXXQ*AEPPXPRPFXD-XXXP 367
+P I P PPP PF R P P G E A PP P P P
Sbjct: 321 MPTIGFPPPHAAAMVPPPPHPPPFCRPPLHVWGHPTAGVEPTTAAAPPPPSPHAQPPLLP 380
Query: 366 GXPSHXXPRTXPPLNVAF 313
P H P PPL A+
Sbjct: 381 VWPRHLAP-PPPPLPAAW 397
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 566 PXXXQPSKXAAPWTTPXAXXPKXNXPKSGGXXXXPQXXPXNTPRXGXPXRTPALNPXVSR 745
P QPS+ WT P A P+ P +G ++PR P +PA N R
Sbjct: 303 PPPQQPSQRY--WTPPPAITPEPAKPAAGKPTSSSPPSTKDSPRPPLPAPSPAANGGDPR 360
Query: 746 L 748
L
Sbjct: 361 L 361
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 8.9
Identities = 25/76 (32%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = +3
Query: 594 PPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCEPPR*TXXFPAXXLRXPGAX 773
PPP PP P K P K P P PPG PP R P A
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPPKGPSPPPPP--PPGGKKGGPPP---PPPKGGASRPPAAP 393
Query: 774 HXP-GSGXSQKXAXPL 818
P GS Q PL
Sbjct: 394 GVPTGSADQQAKLKPL 409
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 831 RGXXDPPNXPPSXXPGXPPRXPXXG 905
+G PP PP G PP P G
Sbjct: 360 KGPSPPPPPPPGGKKGGPPPPPPKG 384
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 12/43 (27%), Positives = 14/43 (32%)
Frame = +3
Query: 594 PPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCEPP 722
PPP PP P P P + PP + PP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPP 355
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = +2
Query: 365 PGXXXSXNGRGXGGSAHXXXSPRXGX----RXDGHRANGSAXXGGGXXRXXKPGXEHXGG 532
P + N R GG H R G R G+ G+ GG + G EH GG
Sbjct: 147 PSPVYTPNARSNGGGDHHQNG-RYGSHPHSRGSGYGGGGNRRGNGGGGGGGRRGQEHHGG 205
Query: 533 TAXQR 547
QR
Sbjct: 206 FDGQR 210
>06_02_0126 + 12130409-12130532,12131015-12131373
Length = 160
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Frame = +2
Query: 344 GXXWEGXPGXXXSXNGRGXGGSAHXXXSPRXGXRXDGH-RANGSAXXGGGXXRXXKPGXE 520
G + G G G G GG + G +G+ R G GGG PG
Sbjct: 90 GGGYGGYGGGYGGGYGGGGGGGGYGGYGGYGGGGYEGYGRGYGGGGGGGGYGGGGYPGGG 149
Query: 521 HXGG 532
+ GG
Sbjct: 150 YYGG 153
>06_01_0178 + 1386981-1387505
Length = 174
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +2
Query: 329 GGXVRGXXWEGXPGXXXSXNGRGXGGSAHXXXSPRXGXRXDGHRANGSAXXGGGXXRXXK 508
GG G +G G G G GG + G G A G GGG R
Sbjct: 48 GGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGGAGGHGG-AGGGGGGGGGKGRKGG 106
Query: 509 PGXEHXGGTAXQR 547
G + G A R
Sbjct: 107 RGGDGGSGGAGGR 119
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.9
Identities = 27/103 (26%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Frame = +3
Query: 594 PPPGXPPXRXPXKXTLQNPVXKXXXP-XPTRXIP----PGXVXRCEPPR*TXXFPAXXLR 758
PPP PP P L P P P R +P PG + P P R
Sbjct: 618 PPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSR 677
Query: 759 XPGAXHXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXPGXPP 887
P G PL R + P P + P PP
Sbjct: 678 TPTGAATSSKGPPPPPPPPLPPANR--TNGPGVPSAPPPPPPP 718
Score = 28.3 bits (60), Expect = 8.9
Identities = 29/107 (27%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Frame = +3
Query: 591 GPPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCEPPR*TXXFPAXXLRXPGA 770
GPPP PP P T V P P PP R P PA L P
Sbjct: 688 GPPPPPPPPLPPANRTNGPGVPSAPPPPP----PPPPANRSNGP----SAPAPPLPPPLP 739
Query: 771 XHXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXP--GXPPRXPXXG 905
PL + PP P + P PP P G
Sbjct: 740 AAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHG 786
>07_03_1751 - 29215074-29216270
Length = 398
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +2
Query: 326 KGGXVRGXXWEGXPGXXXSXNGRGXGGSAHXXXSPRXGXRXDGHRANGSAXXGGG 490
KGG V G G G + G G GG G GH A G GGG
Sbjct: 333 KGGGVGGGAGGGFGGGGGAGAGGGFGGGKGGGFGGGVGG---GHGAGGGGAGGGG 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,371
Number of Sequences: 37544
Number of extensions: 289772
Number of successful extensions: 1531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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