Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H12
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.49
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.49
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.0
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 8.0
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.49
Identities = 33/120 (27%), Positives = 40/120 (33%)
Frame = +3
Query: 537 PXKGXXXKRXPXXXNLXXGPPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCE 716
P G + P + PPP PP R P + P P+R PPG +
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG---MPPPPPPSRFGPPG-MGGMP 334
Query: 717 PPR*TXXFPAXXLRXPGAXHXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXPGXPPRXP 896
PP P +R PG P A P + PP PPS PP P
Sbjct: 335 PP------PPPGMRYPGGM-PPPPPPRYPSAGPGMYPPPPPSRPP-APPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.49
Identities = 33/120 (27%), Positives = 40/120 (33%)
Frame = +3
Query: 537 PXKGXXXKRXPXXXNLXXGPPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCE 716
P G + P + PPP PP R P + P P+R PPG +
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPG---MPPPPPPSRFGPPG-MGGMP 344
Query: 717 PPR*TXXFPAXXLRXPGAXHXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXPGXPPRXP 896
PP P +R PG P A P + PP PPS PP P
Sbjct: 345 PP------PPPGMRYPGGM-PPPPPPRYPSAGPGMYPPPPPSRPP-APPSGHGMIPPPPP 396
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 344 GXXWEGXPGXXXSXNGRGXGGSAHXXXSPRXGXRXDGHRANGSAXXGGG 490
G W G G GRG GG G R G G GGG
Sbjct: 78 GGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGG 126
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/69 (30%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = +2
Query: 332 GXVRGXXW--EGXPGXXXSXNGRGXGGSAHXXXSPRXGXRXDGHRANGSAXXGGGXXRXX 505
G RG W G G G G GG G R G G GGG R
Sbjct: 65 GGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGG-GGGGGGRGG 123
Query: 506 KPGXEHXGG 532
G GG
Sbjct: 124 GGGGRGGGG 132
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 797 PKXSXPLXFXXAGXAGPPKQXPXXXPRGPPPXXXP 901
P P AG + PP P PR PPP P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP 156
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.0
Identities = 28/104 (26%), Positives = 32/104 (30%)
Frame = +3
Query: 594 PPPGXPPXRXPXKXTLQNPVXKXXXPXPTRXIPPGXVXRCEPPR*TXXFPAXXLRXPGAX 773
PPP P + + T ++P P P IPP PP A P
Sbjct: 512 PPPAPGPHKEQRRSTSKDP--PRPAPPPVSSIPP-------PPPIAGLLAANGTNVPIPP 562
Query: 774 HXPGSGXSQKXAXPLXFXXRGXXDPPNXPPSXXPGXPPRXPXXG 905
P PL G PP PP G PP P G
Sbjct: 563 PPP---------PPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPG 597
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/72 (29%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = +2
Query: 326 KGGXVRGXXWEGXPGXXXSXNGR-GXGGSAHXXXSPRXGXRXDGHRANG---SAXXGGGX 493
+GG W G G GR G GG S G + NG GGG
Sbjct: 139 QGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGG 198
Query: 494 XRXXKPGXEHXG 529
R G E G
Sbjct: 199 GRGGNQGGEQGG 210
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.0
Identities = 27/109 (24%), Positives = 30/109 (27%), Gaps = 8/109 (7%)
Frame = +3
Query: 594 PPPGXPPXRXPXKX--TLQNPVXKXXXPXPTRXIPPGXVXRCEPPR*TXX---FPAXXLR 758
P P P P PV P P+ PG V + P + P
Sbjct: 160 PQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSE 219
Query: 759 XPGAXHXPGSGXSQKXAXPLXFXXRGXXDPPNXP---PSXXPGXPPRXP 896
P P G P G PP P P PG P R P
Sbjct: 220 DPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRP 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,770,138
Number of Sequences: 27780
Number of extensions: 204026
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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