Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H11
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    28   9.8  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    28   9.8  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
            C12C8.3b protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 147  GVINFAKSVASDATNAHANKKTKNQHRKLFTKTSQILR 34
            G  N+   VA+++ NA A   T+N   ++FT   Q +R
Sbjct: 933  GYFNYPWGVATNSHNAIAVSDTRNHRVQIFTPQGQFVR 970


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
            C12C8.3a protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 147  GVINFAKSVASDATNAHANKKTKNQHRKLFTKTSQILR 34
            G  N+   VA+++ NA A   T+N   ++FT   Q +R
Sbjct: 937  GYFNYPWGVATNSHNAIAVSDTRNHRVQIFTPQGQFVR 974


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -3

Query: 246 SMVSIPRSAIPAARNGTAFCAEDFRQAVSFGRHGVINFAKSVASDATNAHANKKTKNQHR 67
           S +  P + +    N      ED  Q VS G  GV   A S +   TN H   + + Q +
Sbjct: 505 STIIAPMTTLEVQTNSLVGRLEDL-QEVSPGGAGVN--ASSDSQSITNNHTTPRPEKQKK 561

Query: 66  KLFTK 52
           K FTK
Sbjct: 562 KKFTK 566


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 147  GVINFAKSVASDATNAHANKKTKNQHRKLFTKTSQILR 34
            G  N+   VA+++ NA A   T+N   ++FT   Q +R
Sbjct: 937  GYFNYPWGVATNSHNAIAVSDTRNHRVQIFTPQGQFVR 974


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 147  GVINFAKSVASDATNAHANKKTKNQHRKLFTKTSQILR 34
            G  N+   VA+++ NA A   T+N   ++FT   Q +R
Sbjct: 933  GYFNYPWGVATNSHNAIAVSDTRNHRVQIFTPQGQFVR 970


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,621
Number of Sequences: 27780
Number of extensions: 366988
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)