Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H11
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    65   9e-13
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   3.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   3.6  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   6.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   8.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 64.9 bits (151), Expect = 9e-13
 Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 9/205 (4%)
 Frame = +2

Query: 170 CLKSSAQKAVPFLAAGIADLGIETMDPMTVGRVNTVQAG----LHMDFRDTTXXXXXXXX 337
           C+  + + AV  LA G+    I  ++P+ V  V   ++     L  ++++          
Sbjct: 43  CIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNL 102

Query: 338 XXXXXXX-YDKTLLDLKC---SVTLVGEYTLGGQLLILPIEGTGKYXXXXXXXXXXXXLD 505
                   +DK +L  +     V  V +Y + G++L+LP+ G GK             + 
Sbjct: 103 EIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIY 162

Query: 506 VEERIVEGDRYWHVSDWKHSAE-DVSKVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQE 682
            E+    G+ Y  +   KH+ + + +KV+ +F+NLF+GN++L + ++ F N N   +F+E
Sbjct: 163 CEKYEKNGETYLRIK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKE 220

Query: 683 VAPPMXQGYRLQDIHETFKLFDKVP 757
           +     + + L       ++F++VP
Sbjct: 221 LQAAYEETFSLVFTKIDNEIFNRVP 245


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 482 CPG---F*SCTFRCLRWVVSVVGHPTCI 408
           CP    F  C  RC R+  +VV  P CI
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 482 CPG---F*SCTFRCLRWVVSVVGHPTCI 408
           CP    F  C  RC R+  +VV  P CI
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 200 PFLAAGIADLGIETMDPMTVGR 265
           PFL++ ++ + +  + P T+GR
Sbjct: 4   PFLSSSVSTVIVTALTPSTLGR 25


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 732 HSNCSIRCLSR 764
           HS C+IRCL++
Sbjct: 78  HSACAIRCLAQ 88


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 430 TDTTHRRHRKVQDQNPGHHNED 495
           T   H+ H K + +N  H N+D
Sbjct: 50  TSQPHQDHNKEKSKNNHHCNQD 71


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 456 PVPSMGSISSWPPNVYSPTSV 394
           P+P+M ++S  PP    P S+
Sbjct: 419 PIPNMSNMSGMPPLPNMPGSM 439


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 240 VSIPRSAIPAARNGTAFCAEDFRQAVSFGRHGVINFAKSV 121
           ++ P +  P    G     +DF +  S    GV+ FAK +
Sbjct: 217 LACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRI 256


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 412 HVGWPTTDTTHRRHRKVQDQNPGHHNED 495
           +V  PT     ++   V   +PG HN D
Sbjct: 105 NVAVPTKSILEKKPELVDATDPGEHNGD 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,705
Number of Sequences: 438
Number of extensions: 4503
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)