Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H10
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    36   0.007
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    30   0.49 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.6  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   6.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.9  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 28/82 (34%), Positives = 36/82 (43%)
 Frame = +3

Query: 342 EGVVMELADCALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFK 521
           EG  M+L   A PL           +  KD  A  +     +K G  R DLL AN+ IFK
Sbjct: 59  EGEAMDLNHAA-PLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFK 117

Query: 522 EQGQALDKAARKDVKVLVCWQP 587
           E  + + K   KD  +LV   P
Sbjct: 118 EILREVTKYT-KDAILLVATNP 138


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 565 RSLFVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQL 693
           +++ V + +   A +CSKY PSIP      +TR  Q   QS L
Sbjct: 404 KAIVVLSTSGNTARLCSKYRPSIP---IVMVTRCPQRARQSHL 443


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 475 PSFLGIAPTRKAAA--TSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWR 302
           P F  + P RK +A  T+L  SS       P  + RA SANS+T+P   P   A S + R
Sbjct: 516 PQFSAV-PHRKVSAQDTNLMGSSPGMYNHMPYLN-RATSANSITSPGVLPEGMAASLKKR 573

Query: 301 KT 296
            T
Sbjct: 574 TT 575


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 436 ATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPI 329
           +T   ++SG     T   SG    + S+TTP+STP+
Sbjct: 574 STITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPL 609


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 760 VDEWFPQMITLLTSXTVL 707
           VDEWFP+M T LT   +L
Sbjct: 231 VDEWFPKMETSLTLDELL 248


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 486 KDLLAANVRIFKEQGQALDKAARKDVKVLVCWQPSQYKCSNMF 614
           K L    + +    G  +DKA +  V  LV W  S   C+N F
Sbjct: 290 KRLSCLVISMLDVDGFRIDKATQMTVDFLVDWAKSVRLCANRF 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,099
Number of Sequences: 5004
Number of extensions: 68787
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)