Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H10
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 162 3e-40
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 157 1e-38
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 130 2e-30
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 33 0.22
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891... 30 2.7
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 3.6
09_01_0051 - 862286-864670 29 6.3
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 28 8.3
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 28 8.3
01_01_0205 + 1764034-1767601,1767934-1767944 28 8.3
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 162 bits (394), Expect = 3e-40
Identities = 88/196 (44%), Positives = 114/196 (58%)
Frame = +3
Query: 198 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 377
+P++V+VTGAAGQI Y+++ IA G + G QPV LHLLD+ L GV MEL D AL
Sbjct: 40 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 99
Query: 378 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 557
PLL GV+ T++ EAFK V A ++G PR++GMERKDL++ NV I+K Q AL + A
Sbjct: 100 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAP 159
Query: 558 DVKVLVCWQPSQYKCSNMF*ICSIYSKRKFHCHDSS*SKQGSVPTCC*NWSTVXDVKRVI 737
+ KVLV P+ + + C + V DVK I
Sbjct: 160 NCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAI 219
Query: 738 IWGNHSSTQFPDASNA 785
IWGNHSSTQFPDAS+A
Sbjct: 220 IWGNHSSTQFPDASHA 235
Score = 62.5 bits (145), Expect = 4e-10
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = +1
Query: 520 KSKARLWTKRLVKM*RSLFVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAA 699
KS+A + + L V NPANTNAL+ ++AP+IP +N T +TRLD NRA Q+A
Sbjct: 147 KSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAE 206
Query: 700 KIGV 711
K+ V
Sbjct: 207 KLNV 210
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 157 bits (380), Expect = 1e-38
Identities = 86/196 (43%), Positives = 111/196 (56%)
Frame = +3
Query: 198 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 377
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L G+ MEL D A
Sbjct: 4 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAF 63
Query: 378 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 557
PLL G++ T + EA V A +VG PRKEGMERKD+++ NV I+K Q AL+ A
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAP 123
Query: 558 DVKVLVCWQPSQYKCSNMF*ICSIYSKRKFHCHDSS*SKQGSVPTCC*NWSTVXDVKRVI 737
+ KVLV P+ + ++ C + V DVK I
Sbjct: 124 NCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAI 183
Query: 738 IWGNHSSTQFPDASNA 785
IWGNHSSTQ+PD ++A
Sbjct: 184 IWGNHSSTQYPDVNHA 199
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +1
Query: 571 LFVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVQ 714
L V NPANTNALI ++APSIP++N T +TRLD NRA Q++ K+ VQ
Sbjct: 128 LVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQ 175
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 130 bits (313), Expect = 2e-30
Identities = 77/194 (39%), Positives = 98/194 (50%)
Frame = +3
Query: 204 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 383
+ V V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 74 VNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133
Query: 384 LAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDV 563
L V +P F+D A L+GA PR GMER LL N +IF EQG+AL+ A ++V
Sbjct: 134 LREVSIGIDPYVVFEDAEWALLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNV 193
Query: 564 KVLVCWQPSQYKCSNMF*ICSIYSKRKFHCHDSS*SKQGSVPTCC*NWSTVXDVKRVIIW 743
KV+V P + FH + V + IW
Sbjct: 194 KVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 253
Query: 744 GNHSSTQFPDASNA 785
GNHS+TQ PD NA
Sbjct: 254 GNHSTTQVPDFLNA 267
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 33.5 bits (73), Expect = 0.22
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Frame = -1
Query: 589 LGCQQTRTFTSLRAALSKAWPCSLKMRTLAARRSFLSIP---SFLGIAPTRKAAATSLKA 419
+G TR +++AA A + R L + S +S+P S IA RK++++
Sbjct: 60 IGSLMTRELEAIKAAPPHATAAATTPRRLRRQSSPVSVPCGASPRKIAALRKSSSSLSTT 119
Query: 418 SSGFAVGR-TPAKSGRAQSA--------NSMTTPSSTPIIGA 320
SSG GR T S SA +S TTP+S+P++ A
Sbjct: 120 SSGGGSGRRTDRVSAEESSACKTAACRRSSSTTPASSPMLAA 161
>02_05_0329 -
27986261-27987372,27988632-27988638,27988999-27989128,
27989157-27989216,27989318-27989970,27990056-27990526
Length = 810
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -1
Query: 532 WPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGR 395
+P L TLAAR +F++ PS + +A K+ +T LKA + V R
Sbjct: 514 YPAHLMPATLAARDTFVARPSDVILATMPKSGSTWLKALAFCVVHR 559
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 180 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLE 344
G ++ E +R+ + Q Q+A GA FGP+ P L +DIA + + +
Sbjct: 187 GEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYD 241
>09_01_0051 - 862286-864670
Length = 794
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 514 MRTLAARRSFLSIPSFLGIAPTRKAAATSLKA 419
MR AA RSFL +PS I T A++ SL A
Sbjct: 1 MRCAAAARSFLPLPSTTRIHTTATASSPSLAA 32
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -1
Query: 460 IAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTP---SSTPIIGA--ISRRWRKT 296
+A AAAT + +G +V TP G + + TTP S P+I + + R
Sbjct: 225 LAAAAAAAATCSSSPAGSSVPITPTAVGHSGGGQTQTTPCAFSEAPVITSDDVEANLRLL 284
Query: 295 GC 290
GC
Sbjct: 285 GC 286
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -1
Query: 481 SIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAIS 314
S P+F G T A T + A TP+ G +A + TPSSTP GA S
Sbjct: 25 STPAF-GTPSTNPAFGTPSSTPAFGAPSSTPS-FGTPSTAPAFGTPSSTPAFGAPS 78
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -1
Query: 862 VQMRLSNMHHH**FQNRF*APPTIA--TAFEA---SGNWVDEWFPQMITLLTSXTVL 707
V + + N+ H+ F R PP I TA E+ S NW+ PQ +T LT TVL
Sbjct: 1060 VSLHVLNLSHNA-FSGRI--PPQIGGITALESLDLSSNWISGEIPQELTNLTFLTVL 1113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,145,049
Number of Sequences: 37544
Number of extensions: 457225
Number of successful extensions: 1309
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -