Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H09
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.41 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.96 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.96 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.1  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 30/89 (33%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
 Frame = -3

Query: 854 FXPGXRXXRGGXXRXDPGGXXTRGGXGXGGXPAGEXXXGXXXXXXXLXXWGFGPXXYXGG 675
           + PG R  RGG  R   GG    G  G GG   G    G           G G     GG
Sbjct: 3   YTPGSRGGRGG-SRGGRGG-FNGGRGGFGGGRGGARGGGRGGARGGRGGRG-GARGGRGG 59

Query: 674 XXGG-GGXGGGAP--XXPLXXXGAFLGPG 597
             GG GG  GGA     P    G F+  G
Sbjct: 60  SSGGRGGAKGGAKVIIEPHRHAGVFIARG 88


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 754 PAGXPPXPXPPRVXXPPGSXRXXPPRQXLXPGKKPXP 864
           P G PP P PP    PP      PP   +   K   P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 25/80 (31%), Positives = 27/80 (33%)
 Frame = -3

Query: 890 PPXLGXXXXGXGFXPGXRXXRGGXXRXDPGGXXTRGGXGXGGXPAGEXXXGXXXXXXXLX 711
           PP  G      GF  G     GG      G     GG G  G   G    G       L 
Sbjct: 201 PPGPGGFGGFGGFG-GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG-------LG 252

Query: 710 XWGFGPXXYXGGXXGGGGXG 651
            +G GP  + GG  G GG G
Sbjct: 253 GFGGGPGGFGGGPGGHGGPG 272



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 30/90 (33%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
 Frame = -3

Query: 863 GXGFXPGXRXXRGGXXRXDPGGXXTRGGXGXGGXP-AGEXXXGXXXXXXXLXXWGFGPXX 687
           G GF  G     GG     PGG    GG G  G    G    G           GFG   
Sbjct: 187 GGGFG-GFGGGSGGPP-PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244

Query: 686 YXGGXXGGGGXGGGAPXXPLXXXGAFLGPG 597
             GG  GG G  GG P       G   GPG
Sbjct: 245 --GGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = -2

Query: 678 GXFXGXGSGGXGPXXXPXXVXGFFGAWXLXGXXPXXPXXRGPRVSXXGXAAXXGGEPASX 499
           G F G G G  GP   P    GF G               G      G     GG P   
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247

Query: 498 PRGXGXRG 475
             G G  G
Sbjct: 248 GGGLGGFG 255


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
 Frame = +1

Query: 739  PXXXSPAGXPPXPXP----PRVXXPPGSXRXXPPRQXLXPGKKPXPXXXXPK 882
            P   +P+G PP P P    P V  P G+     P     P   P      PK
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +1

Query: 739  PXXXSPAGXPPXPXPPRVXXP-PGSXRXXPPRQXLXPGKKPXP 864
            P   +P+G PP P P     P P      PP      G  P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,649
Number of Sequences: 5004
Number of extensions: 19192
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)