Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H08
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.50 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 488 ARYYRDLVYKIPTVPEANN 544
           +++  DL+ K+PT PE NN
Sbjct: 70  SKFEEDLMNKLPTTPEYNN 88


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 184 YVLDIVLFLXQESQYKLARKYRSTLFVF 267
           YV+ +  ++ + S YK+ ++ +  LF+F
Sbjct: 277 YVMSLWYWIDRNSAYKIDQRIQKGLFLF 304


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 435 MKLHDLHWEVRDSALELLHVITE-ISFIKFPPFQKQIIQDKLINVAATVAFNDYEAYVQV 611
           MK+ +L ++ +    E      E +  +K    Q  +I D  I++   ++ N   +YV  
Sbjct: 370 MKISNLSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVIS 429

Query: 612 SALKC 626
             +KC
Sbjct: 430 GIVKC 434


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 118 DFGDVKPDYSSVENQDNVFVMTYVLD 195
           DFG  +   +++++ D  + M Y+LD
Sbjct: 41  DFGSDEKRQAAIQSGDYNYTMNYLLD 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,042
Number of Sequences: 438
Number of extensions: 2946
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)