Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H07
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.024
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.38
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.38
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 6.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.024
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = +1
Query: 580 PPPXXAGXXXPPXXXXGXGXXXPPPPXGXKXPGXGGGXFFXXXPPPXXGGGAXX*XPPPP 759
PPP PP PPPP + G P P G A PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS------IPLPPQGRSA----PPPP 364
Query: 760 PPRGGXXXXR 789
PPR R
Sbjct: 365 PPRSAPSTGR 374
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 714 PGXGGGGXXLTXPPPPPPXR 773
P G G + PPPPPP R
Sbjct: 325 PPIGNGSSNSSLPPPPPPPR 344
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 708 PPPGXGGGGXXLTXPPPPP 764
PP G G L PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 646 PPPPXGXKXPGXGGGXFFXXXPPPXXGGGAXX*XPPPPPPR 768
PPPP + G PP G PPPPPPR
Sbjct: 313 PPPPPSRRNRGK---------PPIGNGSSNSSLPPPPPPPR 344
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 9/70 (12%)
Frame = -2
Query: 763 GGGGGXVXXXPPPPXPGGG---------XXKKXXPPPXPGXXPPLGGGXXPXXXXXXXKX 611
G G PPPP P + PPP P P G P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 610 GPLXPPXXGG 581
P PP G
Sbjct: 388 PPAPPPAIPG 397
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 733 PPPPXPGGGXXKKXXPPPXPG 671
PPPP PG + PPP PG
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 709 PPPXXGGGAXX*XPPPPPPRG 771
PPP G PPPPPP G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 733 PPPPXPGGGXXKKXXPPPXP 674
PPPP P G PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 733 PPPPXPGGGXXKKXXPPPXP 674
PPPP P G PPP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 435 PPPPPXKKXXPPRXPP 482
PPPPP PP PP
Sbjct: 10 PPPPPPPGFEPPSQPP 25
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 708 PPPGXGGGGXXLTXPPPPPP 767
PPP G + PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 22.6 bits (46), Expect(2) = 6.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 860 PPPPGXPPP 886
PPPPG PP
Sbjct: 13 PPPPGFEPP 21
Score = 21.4 bits (43), Expect(2) = 6.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 734 LXXNXPPPPPP 766
L PPPPPP
Sbjct: 4 LPPGNPPPPPP 14
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 648 PPPXGGXXPGXGGGXXFXXXPPPGXGGGGXXLTXPPPPPP 767
P P P G PPPG G G PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP--PPPPPPP 783
Score = 29.5 bits (63), Expect = 0.67
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 580 PPPXXAGXXXPPXXXXGXGXXXPPPPXGXKXPGXGGGXFFXXXPPPXXGGGAXX*XPPPP 759
P P A PP G PPPP G G G PPP G P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGV----AGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -2
Query: 733 PPPPXPGGGXXKKXXPP-PXPGXXPPLGGGXXPXXXXXXXKXGPLXPP 593
PPPP P P P P P +GG P GP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 733 PPPPXPGGGXXKKXXPPPXPGXXPPLGGG 647
PPPP P G PPP P GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 649 PPPXGXKXPGXGGGXFFXXXPPPXXGGGAXX*XPPPPPP 765
P P P PPP G PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Frame = +2
Query: 734 LXXNXPPPPPPXEXXXXXAXXXXXXXXXXXXXGXXG------GAXXXXPPPPGXPPP 886
L PPPPPP A G G PPPP PPP
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 420 GGXXXPPPPPXKKXXPPRXPP 482
GG PPPPP P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 435 PPPPPXKKXXPPRXPP 482
PPPPP PP PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 416 GGGGXXPPPPPXKKXXP 466
G GG PPPPP ++ P
Sbjct: 689 GTGGRAPPPPPAEEVAP 705
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/46 (28%), Positives = 13/46 (28%)
Frame = +2
Query: 749 PPPPPPXEXXXXXAXXXXXXXXXXXXXGXXGGAXXXXPPPPGXPPP 886
PPPPP G PPPP PPP
Sbjct: 908 PPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 660 GGXXPGXGGGXXFXXXPPPGXGGGG 734
GG G GGG PPPG GG G
Sbjct: 187 GGGFGGFGGGSG---GPPPGPGGFG 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.153 0.543
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,455
Number of Sequences: 5004
Number of extensions: 37301
Number of successful extensions: 291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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