Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H06
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    69   5e-12
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168...    29   3.7  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 42/169 (24%), Positives = 80/169 (47%)
 Frame = +2

Query: 53  PELPESSRKXLIENYQLRPEAAIQIVNEPILLKYFVDLAEERSQSTKIANLLINELLTVL 232
           PELPE+ R+   EN  L  +  + + N+  + ++F    E  + +   AN ++ ++   L
Sbjct: 362 PELPEAKRRRF-ENMGLSMQDVLFLANDDNVARFFDSTLEHGADAKLAANWIMGDIAAYL 420

Query: 233 NKNKLDISDCPITLRQXXXXXXXXXXXXISLEVFKNVLDDLVISSDSNIMPSKIIQEKNW 412
              KL I +  +T  +            IS ++ K +L +L+    +      +I+EK+ 
Sbjct: 421 KNEKLSIDEIKLTPLELSELIASIRNGTISGKIGKEILIELIAKGGT---VKSVIEEKDL 477

Query: 413 TLISDETEIAKFCIEIIENNPKLVKQYKEGKVKVLKALLGVMSKNSQNK 559
             I+D   I     +++ +NPK ++QY+ GK K+     G + K S+ K
Sbjct: 478 VQIADPAAIEAMVDQVLADNPKQLEQYRSGKTKLQGFFAGQVMKASKGK 526


>05_01_0227 -
           1684597-1684727,1685003-1685100,1685176-1685270,
           1685360-1685545,1686185-1686298,1686583-1686684,
           1686811-1687096,1687242-1687291,1687351-1687479,
           1687590-1687724,1688163-1688165
          Length = 442

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 440 AKFCIEIIENNPKLVKQYKEGKVKVLK--ALLGVMSKNSQNKFDMS 571
           A+F + I  NNP+L KQY E K   +K  A     +K++  KFD S
Sbjct: 175 AEFAVSIDPNNPELRKQYSEIKELHMKEVANRSKPTKHTVFKFDKS 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,819
Number of Sequences: 37544
Number of extensions: 212230
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)