Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H03
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103...    30   3.1  
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093...    29   7.1  
06_01_0760 - 5676973-5677830                                           28   9.3  

>01_06_0920 -
           33009183-33009335,33009421-33009741,33010221-33010343,
           33010476-33010634,33010720-33011086,33011162-33011315,
           33011782-33012874
          Length = 789

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +1

Query: 547 PXSGDXXGKXXXAKGXQKARNRKXAPXXXSPHRXXPPDXHHXNXXSXQRW 696
           P +GD  G    A   Q     + A    +PH    P  HH N    +RW
Sbjct: 484 PLAGDAVGPVTTAVDWQDDLTARFALVQRTPHLPLKPLAHHRNTGPTKRW 533


>01_06_0846 +
           32408333-32408484,32408560-32408926,32409021-32409301,
           32409877-32409931,32410137-32410331,32410417-32410569
          Length = 400

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +1

Query: 547 PXSGDXXGKXXXAKGXQKARNRKXAPXXXSPHRXXPPDXHHXNXXSXQRW 696
           P +GD  G        +       AP   +PH    P  HH N    +RW
Sbjct: 119 PLAGDAVGPVTTGVDWKDDLTACFAPVQRAPHLPLQPLAHHRNTGPTKRW 168


>06_01_0760 - 5676973-5677830
          Length = 285

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 652 GGAYGXTXXXGPFYGS-WPFAG 590
           G  YG     GP+YG  WP+ G
Sbjct: 224 GSGYGQAGGYGPYYGGYWPYGG 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,536
Number of Sequences: 37544
Number of extensions: 168870
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)