Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4 |Schiz...    34   0.022
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   3.4  

>SPAC7D4.15c |ost4||oligosaccharyltransferase subunit Ost4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 32

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 128 ITDIQLAVFSNILGVSIFLLVILYHYIN 211
           +TD+QL       G+S+ LL+ILYHY++
Sbjct: 1   MTDVQLQNIVTTFGISMMLLIILYHYLS 28


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 150 TASWMSVIIFRLDVLN*IKLNYFVLRFFWIRV 55
           TA W+++++F + VLN   + +F    FW  +
Sbjct: 156 TAGWIAILLFLVAVLNSFFVKWFGETEFWFAI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,316
Number of Sequences: 5004
Number of extensions: 34509
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)