Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_H02
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.38 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           33   0.38 
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.5  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    30   2.7  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   6.2  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +1

Query: 655  PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGG 798
            P P G GG+   P   PP     P   G     PPP GG  +    GG
Sbjct: 1187 PPPRGHGGVGGPPT--PPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232



 Score = 31.5 bits (68), Expect = 0.88
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
 Frame = -3

Query: 797  PP--FXGXTXXPPXGGGXXXPXPXXRGXGXFXGGXXXGPXXKPPXPXG 660
            PP  F G T  P   GG   P P  RG G   G         PP P G
Sbjct: 1165 PPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPG 1212


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 18/55 (32%), Positives = 19/55 (34%)
 Frame = +1

Query: 640 PXKXXPXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
           P    P P   G     P   PP     PR  G G   PPP G      + GG P
Sbjct: 333 PPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAG---RGGGGP 384


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
 Frame = +1

Query: 640 PXKXXPXPXGXGGLXXGPXXXPPXKXPXPRXXGX--GXXXPPPXGGXXVXPKXGGXP 804
           P K  P P    G    P    P   P P   G   G   PPP GG    P   G P
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 528 PIXPKKXFFXPXFXXGXPXPXXXFFXXGXPXPPPXGXAPPPXP 400
           P  P K    P    G P P         P PPP G +PPP P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPA--KGPPPPPPPKGPSPPPPP 368



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = +1

Query: 640 PXKXXPXPXGXGGLXXGPXXXPPXK--XPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
           P K  P P        GP   PP K   P P   G     PPP GG     K GG P
Sbjct: 331 PPKAAPPPPP----PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG-----KKGGPP 378


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -2

Query: 498 PXFXXGXPXPXXXFFXXGXPXPPPXGXAPPPXP 400
           P      P P         P PPP   APPP P
Sbjct: 627 PMMANAAPVPPPSMANGAGPVPPPIAVAPPPAP 659


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = -3

Query: 803 GXPPFXGXTXXPPXGGGXXXP-XPXXRGXGXFXGGXXXGPXXKPPXPXGXG 654
           G PP  G    P  GGG   P      G      G   G   +PP P G G
Sbjct: 89  GLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGG 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,131
Number of Sequences: 37544
Number of extensions: 342518
Number of successful extensions: 1615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)