Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H02
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical pr... 48 1e-05
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.59
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.59
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.59
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.59
AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical ... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.4
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 30 2.4
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 2.4
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 4.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.2
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 4.2
>Z48055-3|CAH04721.1| 35|Caenorhabditis elegans Hypothetical
protein T07A5.5 protein.
Length = 35
Score = 47.6 bits (108), Expect = 1e-05
Identities = 17/31 (54%), Positives = 28/31 (90%)
Frame = +2
Query: 125 MITDIQLAVFSNILGVSIFLLVILYHYINAN 217
MI+D+QL + +NILG+++ +LV+L+HY+NAN
Sbjct: 1 MISDVQLGIAANILGIAMLMLVVLFHYLNAN 31
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 498 PXFXXGXPXPXXXFFXXGXPXPPPXGXAPPPXP 400
P F G P P G P PPP APPP P
Sbjct: 88 PMFAGGIPPPPP--MMGGIPPPPPMFGAPPPPP 118
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = -2
Query: 507 FFXPXFXXGXPXPXXXFFXXGXPXPPPX-GXAPPPXP 400
F P G P F G P PPP G PPP P
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +1
Query: 640 PXKXXPXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P P GG P P P PR PPP G P G P
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 329
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 640 PXKXXPXPXGXGGLXXGPXXX--PPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P K P G G P PP + P G PPP GG P+ G P
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 691 PXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P PP K P G G PPP G P+ G P
Sbjct: 237 PPPPPPPKGSPP-LAGSGSPPPPPAAGSPPPPRTGSPP 273
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G L PP P G PPP G P G P
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 290
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +1
Query: 640 PXKXXPXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P P GG P P P PR PPP G P G P
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 350
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 640 PXKXXPXPXGXGGLXXGPXXX--PPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P K P G G P PP + P G PPP GG P+ G P
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 691 PXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P PP K P G G PPP G P+ G P
Sbjct: 258 PPPPPPPKGSPP-LAGSGSPPPPPAAGSPPPPRTGSPP 294
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G L PP P G PPP G P G P
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 311
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +1
Query: 640 PXKXXPXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P P GG P P P PR PPP G P G P
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSP 335
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 640 PXKXXPXPXGXGGLXXGPXXX--PPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P K P G G P PP + P G PPP GG P+ G P
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 691 PXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P PP K P G G PPP G P+ G P
Sbjct: 243 PPPPPPPKGSPP-LAGSGSPPPPPAAGSPPPPRTGSPP 279
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G L PP P G PPP G P G P
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 296
>AL033514-8|CAA22097.2| 715|Caenorhabditis elegans Hypothetical
protein Y75B8A.8 protein.
Length = 715
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXG 768
P G GG GP PP + P P+ G P P G
Sbjct: 10 PMYGGAGGGGGGPPRGPPQQPPQPQGGGVAVPFPIPQG 47
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 737 PXXRGXGXFXGGXXXGPXXKPPXPXGXG 654
P G G GG GP +PP P G G
Sbjct: 10 PMYGGAGGGGGGPPRGPPQQPPQPQGGG 37
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G+ P PP + P P G PPP P GG P
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGMGGMP 334
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G+ P PP + P P G PPP P GG P
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGP--PGMPGMPPPPPPSRFGPPGMGGMP 344
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 803 GXPPFXGXTXXPPXGGGXXXPXPXXRGXGXFXGGXXXGPXXKPPXPXGXGXFFXG 639
G PP G PP GG P P G G G GP P G G
Sbjct: 181 GGPPGHGGQGGPPGHGGMGGPPPGQGGPG--GPGGPGGPGGMLPKSHGRSNMIEG 233
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 803 GXPPFXGXTXXPPXGGGXXXPXPXXRGXGXFXGGXXXGPXXKPPXPXGXGXFFXG 639
G PP G PP GG P P G G G GP P G G
Sbjct: 461 GGPPGHGGQGGPPGHGGMGGPPPGQGGPG--GPGGPGGPGGMLPKSHGRSNMIEG 513
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 447 GXPXPPPXGXAPPPXP 400
G P PPP G PPP P
Sbjct: 788 GIPPPPPLGIIPPPPP 803
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G + GP PP P G PPP GG + P GG P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPP--ITGGPPPPPPPGG--LPPISGGPP 759
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 803 GXPPFXGXTXXPPXGGGXXXPXPXXRGXGXFXGGXXXGP 687
G PP G PP G P P G F GG P
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 25.4 bits (53), Expect(2) = 9.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 477 PXPXXXFFXXGXPXPPPXGXAPP 409
P P G P PPP G PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP 737
Score = 20.6 bits (41), Expect(2) = 9.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 435 PPPXGXAPPPXP 400
PP G PPP P
Sbjct: 752 PPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G + GP PP P G PPP GG + P GG P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPP--ITGGPPPPPPPGG--LPPISGGPP 759
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 803 GXPPFXGXTXXPPXGGGXXXPXPXXRGXGXFXGGXXXGP 687
G PP G PP G P P G F GG P
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 25.4 bits (53), Expect(2) = 9.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 477 PXPXXXFFXXGXPXPPPXGXAPP 409
P P G P PPP G PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP 737
Score = 20.6 bits (41), Expect(2) = 9.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 435 PPPXGXAPPPXP 400
PP G PPP P
Sbjct: 752 PPISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 655 PXPXGXGGLXXGPXXXPPXKXPXPRXXGXGXXXPPPXGGXXVXPKXGGXP 804
P P G + GP PP P G PPP GG + P GG P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPP--ITGGPPPPPPPGG--LPPISGGPP 342
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -3
Query: 803 GXPPFXGXTXXPPXGGGXXXPXPXXRGXGXFXGGXXXGP 687
G PP G PP G P P G F GG P
Sbjct: 333 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 25.4 bits (53), Expect(2) = 9.9
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 477 PXPXXXFFXXGXPXPPPXGXAPP 409
P P G P PPP G PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPP 320
Score = 20.6 bits (41), Expect(2) = 9.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 435 PPPXGXAPPPXP 400
PP G PPP P
Sbjct: 335 PPISGGPPPPPP 346
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 447 GXPXPPPXGXAPPPXP 400
G P PPP G PPP P
Sbjct: 788 GIPPPPPLGIIPPPPP 803
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,309
Number of Sequences: 27780
Number of extensions: 274538
Number of successful extensions: 1082
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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