Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H01
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 204 6e-53
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 194 8e-50
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 178 5e-45
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777... 138 5e-33
10_08_0120 + 14972010-14973197 33 0.40
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 32 0.70
08_01_0458 + 4046809-4047099,4047269-4047321,4047332-4047722,404... 30 2.1
02_01_0383 + 2776526-2776632,2777579-2777835,2777915-2778366,277... 29 3.7
10_08_0980 - 22002818-22003008,22003646-22003750,22003859-220039... 29 4.9
11_01_0667 + 5436764-5437384,5437684-5437923,5438037-5438159,543... 28 8.6
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 204 bits (499), Expect = 6e-53
Identities = 93/205 (45%), Positives = 138/205 (67%), Gaps = 1/205 (0%)
Frame = +2
Query: 260 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 439
MWPG S +V+++L+ KS YQ + VF++++ GKVLVLDGI+Q T KDE +YQEMI+ L
Sbjct: 86 MWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKVLVLDGIVQLTDKDECAYQEMITHL 145
Query: 440 PLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSXRYLPFMAVGFDS 619
PLC +P+ VL++GGGDGGV RE+ +H V+ I + EID VI++ + P ++VGF
Sbjct: 146 PLCSIPSPKKVLVIGGGDGGVLREICRHGSVESIDICEIDQLVIDVCKDFFPDLSVGFKD 205
Query: 620 PKLTLHVGDGFEFMKNHRQ-EFDVIITDSSDPVGPAVNLFQENYFSLMKSALKPDGIXCS 796
P++ LHVGD EF++N + +D II DSSDP+GPA L ++ +F + AL+P G+ C+
Sbjct: 206 PRVRLHVGDAVEFLRNAPEGTYDAIIVDSSDPIGPAQELVEKPFFDTIARALRPGGVLCN 265
Query: 797 QAGXIWNDIXLVTXXLNSAKISXGG 871
QA +W L+ L+ + + G
Sbjct: 266 QAESMWLHTHLIQDMLSICRETFKG 290
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 194 bits (473), Expect = 8e-50
Identities = 84/161 (52%), Positives = 121/161 (75%), Gaps = 1/161 (0%)
Frame = +2
Query: 239 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 418
WF+E MWPG S +V++VL KS YQN+ VF +++ GKVLVLDG+IQ T++DE +Y
Sbjct: 34 WFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAY 93
Query: 419 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSXRYLPF 598
QEMI+ LPLC K+P+ VL++GGGDGGV REV++H V+ I + EID V+++S ++ P
Sbjct: 94 QEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPH 153
Query: 599 MAVGFDSPKLTLHVGDGFEFMKNHRQ-EFDVIITDSSDPVG 718
+AVGF+ P+++LH+GDG F+KN + +D +I DSSDP+G
Sbjct: 154 LAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVDSSDPIG 194
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 178 bits (433), Expect = 5e-45
Identities = 80/165 (48%), Positives = 118/165 (71%), Gaps = 1/165 (0%)
Frame = +2
Query: 260 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 439
MWPG S +V+ +L+ KS YQ I VF++++ G VLVLDGI+Q T+KDE +YQEM++ L
Sbjct: 75 MWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHL 134
Query: 440 PLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSXRYLPFMAVGFDS 619
PLC +P++VL+VGGGDGGV RE+A+H V++I + EID VI++ + P ++VGF
Sbjct: 135 PLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKD 194
Query: 620 PKLTLHVGDGFEFMKNHRQ-EFDVIITDSSDPVGPAVNLFQENYF 751
P++ LHVGD +F++N + ++D II DSSDP+G + L + F
Sbjct: 195 PRVQLHVGDAVDFLRNAPEGKYDAIIVDSSDPIGEILLLLNHHMF 239
Score = 41.5 bits (93), Expect = 9e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 698 DSSDPVGPAVNLFQENYFSLMKSALKPDGIXCSQAGXIWNDIXLVTXXLNSAKISXGG 871
D S +GPA L ++ +F + ALKP G+ C+QA +W L+ L+ + + G
Sbjct: 252 DPSHIIGPAQELVEKPFFQTIARALKPGGVLCNQAESMWLHTHLIQDMLSICRETFKG 309
>02_02_0206 -
7771835-7771913,7772083-7772219,7772364-7772422,
7772535-7772610,7772717-7772873,7773241-7773329,
7773648-7773750,7773919-7774013,7774301-7774367,
7774894-7775066
Length = 344
Score = 138 bits (334), Expect = 5e-33
Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 3/194 (1%)
Frame = +2
Query: 233 TNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEF 412
+ W+ E D + + VLH SKYQ I + DT GK L++DG +Q T+ DEF
Sbjct: 39 SKWYEEEID--DDLKLCYALNSVLHRGASKYQEIALIDTKHFGKALIIDGKMQSTEVDEF 96
Query: 413 SYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSXRYL 592
Y E + PL H NP+ V I+GGG+G AREV +H V +V+ +ID V++ YL
Sbjct: 97 IYHESLIHPPLLFHPNPKTVFIMGGGEGSAAREVLRHNTVHRVVMCDIDQEVVDFCRTYL 156
Query: 593 PFMAVGFDSPKLTLHVGDGFEFMKNHRQEFDVIITDSSDPV--GPAVNLFQENYFS-LMK 763
F S KL L + D ++ R++FDVI+ D +DPV GP L+ ++++ ++K
Sbjct: 157 TVNWDAFASDKLCLIINDARAELEKSREKFDVIVGDLADPVEGGPCYQLYTKSFYQHIVK 216
Query: 764 SALKPDGIXCSQAG 805
L G+ +QAG
Sbjct: 217 PKLNDRGVFVTQAG 230
>10_08_0120 + 14972010-14973197
Length = 395
Score = 32.7 bits (71), Expect = 0.40
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 256 RYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFG---EGSCLGRNHTMHSER*VFLSGN 426
RY FL+ + TAHR + P F FG EG+ + + H E VF +
Sbjct: 196 RYATDVEFLVGGETFTAHRLVLAARSPVFMVELFGPMKEGTTVNKIHIFDMEAQVFRALL 255
Query: 427 DIIFAFMLPQKSRK 468
I+ MLP+ ++
Sbjct: 256 KFIYTDMLPEMDQE 269
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 530 VKHIVLVEIDDRVIELSXRYLPFMAVGFDSPKLTLHVGDGFEFMKNHRQEFDVIITD 700
++ +V ++ID IE R + F S K+ H+ D +M H +EFDV+ D
Sbjct: 155 LEKVVALDIDKACIEACKRNIKFNGASAMS-KIEPHLTDARVYMLTHPKEFDVVDID 210
>08_01_0458 +
4046809-4047099,4047269-4047321,4047332-4047722,
4047998-4048291
Length = 342
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 458 NPENVLIVGGGDGGVAREVAK-HPQVKHIVL 547
N +++ VGGGDG +AR + K P +K +VL
Sbjct: 180 NVSSLVDVGGGDGSMARAIVKAFPHIKCLVL 210
>02_01_0383 +
2776526-2776632,2777579-2777835,2777915-2778366,
2778845-2779102
Length = 357
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 455 KNPENVLIVGGGDGGV--AREVAKHPQVKHIVLVEIDDRVIE 574
++ E+VLI+GGG GV A E+A K + LV R++E
Sbjct: 127 ESSESVLIIGGGPTGVELAGEIAVDYPEKKVTLVHRGSRLLE 168
>10_08_0980 -
22002818-22003008,22003646-22003750,22003859-22003987,
22004076-22004268,22004270-22004473,22004931-22005071,
22005325-22005486,22005664-22005666
Length = 375
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 293 KEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 388
K+ LH S Y+N +V D +S G +V+DG++
Sbjct: 300 KKHLHGAFSTYKNYEVLDVSSNGGDVVVDGMV 331
>11_01_0667 +
5436764-5437384,5437684-5437923,5438037-5438159,
5438301-5438480
Length = 387
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 802 GLRTXYAVRFQSALHQREVVLLK*IYGRSDWVATVRDNDVKLLSMVLHKFKTV 644
G+R Y +SA+H + G++ WV VRD D +++ + +F V
Sbjct: 94 GIRPRYHTAVESAIHDK---------GKNQWVVLVRDMDTSVVARLATQFLVV 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,477
Number of Sequences: 37544
Number of extensions: 419840
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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