Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_H01
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 247 9e-66
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 247 9e-66
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 29 4.4
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 29 4.4
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 29 4.4
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 29 4.4
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 29 4.4
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 29 4.4
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 28 7.7
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 247 bits (604), Expect = 9e-66
Identities = 108/190 (56%), Positives = 146/190 (76%)
Frame = +2
Query: 263 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 442
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 443 LCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSXRYLPFMAVGFDSP 622
+ H +P+ VLI+GGGDGG+ REV KH V+ + + EID+ VI+++ ++LP M+ GF P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 623 KLTLHVGDGFEFMKNHRQEFDVIITDSSDPVGPAVNLFQENYFSLMKSALKPDGIXCSQA 802
KL L GDGFEF+KNH+ EFDVIITDSSDPVGPA +LF ++Y+ L++ ALK DGI SQ
Sbjct: 163 KLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222
Query: 803 GXIWNDIXLV 832
+W + L+
Sbjct: 223 ESVWLHLPLI 232
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 247 bits (604), Expect = 9e-66
Identities = 108/190 (56%), Positives = 146/190 (76%)
Frame = +2
Query: 263 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLP 442
WPG FS +VK+VL EKSKYQ++ VF++T+ G VLVLDGI+Q T++DEFSYQEM++ LP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 443 LCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSXRYLPFMAVGFDSP 622
+ H +P+ VLI+GGGDGG+ REV KH V+ + + EID+ VI+++ ++LP M+ GF P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 623 KLTLHVGDGFEFMKNHRQEFDVIITDSSDPVGPAVNLFQENYFSLMKSALKPDGIXCSQA 802
KL L GDGFEF+KNH+ EFDVIITDSSDPVGPA +LF ++Y+ L++ ALK DGI SQ
Sbjct: 163 KLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222
Query: 803 GXIWNDIXLV 832
+W + L+
Sbjct: 223 ESVWLHLPLI 232
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 181 KSKIKHGSDTTVSVFTISRSNNVFLAQKYKNSFRPSYRTSNN 56
++ +++ T SV S +++VFL++K + +P+YR S+N
Sbjct: 1106 EANLRYDFLTLQSVKLASETDSVFLSEKLRILVKPNYRKSSN 1147
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 181 KSKIKHGSDTTVSVFTISRSNNVFLAQKYKNSFRPSYRTSNN 56
++ +++ T SV S +++VFL++K + +P+YR S+N
Sbjct: 1106 EANLRYDFLTLQSVKLASETDSVFLSEKLRILVKPNYRKSSN 1147
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 181 KSKIKHGSDTTVSVFTISRSNNVFLAQKYKNSFRPSYRTSNN 56
++ +++ T SV S +++VFL++K + +P+YR S+N
Sbjct: 1106 EANLRYDFLTLQSVKLASETDSVFLSEKLRILVKPNYRKSSN 1147
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = -1
Query: 181 KSKIKHGSDTTVSVFTISRSNNVFLAQKYKNSFRPSYRTSNN 56
++ +++ T SV S +++VFL++K + +P+YR S+N
Sbjct: 1106 EANLRYDFLTLQSVKLASETDSVFLSEKLRILVKPNYRKSSN 1147
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 419 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 574
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 419 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 574
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 419 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 574
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 712 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 763
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 419 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 574
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 419 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIE 574
+E +S KNP L G D +R++ +HP + I +I+ R I+
Sbjct: 572 KEAVSLCKALLIKNPSKRLGCTGDDESASRDIKEHPFFRRIDWFKIETRQIQ 623
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 239 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 403
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 404 DE 409
D+
Sbjct: 1042 DQ 1043
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 239 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 403
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 404 DE 409
D+
Sbjct: 1042 DQ 1043
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 239 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQ-----CTQK 403
W+ D G SFE + L+TEK+ ++ Q++ + K + L + Q C QK
Sbjct: 983 WYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIW-AAGMDKWMSLAAVPQFRWTVCQQK 1041
Query: 404 DE 409
D+
Sbjct: 1042 DQ 1043
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316,886
Number of Sequences: 27780
Number of extensions: 383187
Number of successful extensions: 958
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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