Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G24
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 33 0.054
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 31 0.22
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.5
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 28 2.0
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 27 3.5
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 27 4.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 4.7
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51... 26 6.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 8.1
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.1
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 8.1
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.1 bits (72), Expect = 0.054
Identities = 30/119 (25%), Positives = 51/119 (42%)
Frame = +2
Query: 284 AFGESVSENISLSKSTAFNPGEMTGRSTGADEINSKTAPINRHSVTLDSITNKMNRQTLE 463
A+ ++ + NIS + E+ G +T +D T N+H + + R++L
Sbjct: 340 AYPDAENSNISKINISIAGNKELYGNATQSDPSLYSTWIANKHKTASSATVDSPLRRSLS 399
Query: 464 VQDIMRHSIASEFSFQSKRDLSADEESLIRREAPLPIQQTQAQFPDSISMDNSNLSVGA 640
V D M+ S SF S S ++SL R + + F +S DN +S+ A
Sbjct: 400 V-DAMQ----SNASFSSYSSTSNTDKSL--RPSSYSAVSESSNFTHDVSRDNKEISLNA 451
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 31.1 bits (67), Expect = 0.22
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 359 RSTGADEINSKTAPINRHSVTLDSITNKMNRQTLEVQDIMRHSIASEFSFQ-SKRDLSAD 535
++T AD + + PI R S +DS+ N + + LE +D+MR + + +K+ L
Sbjct: 151 KATLAD-LEQFSNPITRPSKEVDSLENIVTKLDLESEDLMRLKKQEQLDDEIAKKYLLGQ 209
Query: 536 EESLIRREAPLPIQQTQAQFPD 601
+E+ E PL QQT P+
Sbjct: 210 QEA----EEPLVQQQTSIVNPE 227
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 706 LIYQGYPFCQAFEQNPDICIXISS 635
LIY F + F++NPD+C+ + S
Sbjct: 127 LIYVKKRFAECFDKNPDLCLIVYS 150
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Frame = +2
Query: 119 IQRLLNLAEDRSFQNARLREMSDDDMKRIAAQIMVNKSTFNCESSSGILDLERVEAFGES 298
+ + L + + ++L +++ D+K +IM K SS +LD +R+E F
Sbjct: 128 LNKELKIVTSKPSAPSKLVIVANFDLKAFNYRIMYQK----LYDSSEVLD-DRIELFSAL 182
Query: 299 VSENISLSKSTAFNPGEMTGRS---TGADEINSKT--APINRHSVTLDSITNKMN---RQ 454
++S NP E+T G + S +N++S+ L+S + ++ R
Sbjct: 183 TCRKYNISDEDLANPSELTQEPVVVVGRIVVESTNLGGRLNQNSILLES-SRRLGAGVRV 241
Query: 455 TLEVQDIMRHSI 490
L+V D+ +SI
Sbjct: 242 RLKVDDLPSYSI 253
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 452 QTLEVQDIMRHSIASEFSFQSKRDLSADEESLI 550
Q EV+ I R A+ +SF S D+SA+ + LI
Sbjct: 241 QDKEVKTIYRKIKANSYSFPSNVDISAEAKDLI 273
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = +3
Query: 525 YQLMKNL*YEGKLRYQYSRHKLSFLTVFQWTTLTYQWELIXIQMSGFCSNAW 680
Y L+ K Y+ R +L+ + + + WE+I + G C++ W
Sbjct: 237 YSLLMQEIENAKKLYEKDRERLAKVNPKLVYLVDHAWEIIQATIDGICASIW 288
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 434 TNKMNRQTLEVQDIMRHSIASEFSFQ 511
T ++ R TLE+ I++H+ S + FQ
Sbjct: 613 TQRLQRYTLELDTILKHTEQSSWDFQ 638
>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
L51-b|Schizosaccharomyces pombe|chr 2|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 384 FISSAPVDRPVISPGLNAVDL-LRDIFSETDSPKAS 280
F SS P RP + PG+ L L D FS+++ + S
Sbjct: 117 FSSSNPKSRPTLPPGILYAKLKLLDSFSDSEKKRLS 152
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 8.1
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = +2
Query: 320 SKSTAFNPGEMTGRST-GADEINSKTAPINRHSVTLDSITNKMNRQTLEVQDIMRHSI-A 493
+KS F PGE+TG S+ GA N P R + +D++ + +++ +++ A
Sbjct: 333 NKSNFFIPGEVTGPSSFGAIYYNRGRQPNQRPANLIDALNATSSDNVYFLREEGENALDA 392
Query: 494 SEFSFQSKRDL--SADEESLIRREAPLPIQQTQAQFPDSISMDNSNLSVGAY 643
S F + R + + L+ LP+ +A I+ D+ N Y
Sbjct: 393 SAFHYSVYRIILRFLRMDGLMEIPYDLPVDLAEAWHQIVINEDSFNPKTEKY 444
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +2
Query: 470 DIMRHSIASEFSFQSKRDLSADEESLIRREAPLPIQQTQAQFPDSISMDNSNLSVGAYXN 649
D H+I +E +F + D+S D+E ++ L Q + D I ++ +
Sbjct: 136 DSTNHTIGTERAFLIEEDVSEDDEIQMKSIHELRFAGEQQRIVDEIEYLVDGVTFSGNSS 195
Query: 650 TDVRILLECLAKRIALIDQRFRASLK 727
+ L +A++ + D FR LK
Sbjct: 196 ASRYLSLIGIAEK--MFDNSFRLCLK 219
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 29 NSLRFGLKKSYDCVRNKVRKMDNPIMTPNKIQRLLNLAEDRSFQNARLREMSDDDMKRIA 208
N LR + D ++ + N + P +++ + E S A +EMSD D+K I
Sbjct: 737 NLLRVETLRIEDMIKRSFSENVNQTLVPQHEEKIKSFEEKLS---ALKKEMSDVDLKEIK 793
Query: 209 AQIMVNKS 232
+ ++ ++S
Sbjct: 794 SCLLSSES 801
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,026
Number of Sequences: 5004
Number of extensions: 63264
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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