Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G24
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250...    32   2.4  
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ...    32   2.4  
AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome assoc...    32   2.4  
AK097032-1|BAC04930.1|  217|Homo sapiens protein ( Homo sapiens ...    31   4.2  

>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
            protein.
          Length = 2442

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 389  KTAPINRHSVTLDSITNKMNRQTLEVQDIMRHSIASEFSFQSK-RDLSADEESLIRREAP 565
            KT+P+   S+ LDS+  ++ R+   +Q  +R + A E  ++ K +DL+    SL + +A 
Sbjct: 2130 KTSPMEEQSLKLDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLAL---SLAQTKAS 2186

Query: 566  LPIQQTQAQF 595
            +   Q  A F
Sbjct: 2187 VSSLQEVAMF 2196


>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
            protein 1 protein.
          Length = 2442

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 389  KTAPINRHSVTLDSITNKMNRQTLEVQDIMRHSIASEFSFQSK-RDLSADEESLIRREAP 565
            KT+P+   S+ LDS+  ++ R+   +Q  +R + A E  ++ K +DL+    SL + +A 
Sbjct: 2130 KTSPMEEQSLKLDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLAL---SLAQTKAS 2186

Query: 566  LPIQQTQAQF 595
            +   Q  A F
Sbjct: 2187 VSSLQEVAMF 2196


>AF022655-1|AAC06349.1| 2442|Homo sapiens cep250 centrosome associated
            protein protein.
          Length = 2442

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +2

Query: 389  KTAPINRHSVTLDSITNKMNRQTLEVQDIMRHSIASEFSFQSK-RDLSADEESLIRREAP 565
            KT+P+   S+ LDS+  ++ R+   +Q  +R + A E  ++ K +DL+    SL + +A 
Sbjct: 2130 KTSPMEEQSLKLDSLEPRLQRELERLQAALRQTEAREIEWREKAQDLAL---SLAQTKAS 2186

Query: 566  LPIQQTQAQF 595
            +   Q  A F
Sbjct: 2187 VSSLQEVAMF 2196


>AK097032-1|BAC04930.1|  217|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39713 fis, clone SMINT2013170, weakly similar to
           TRANSCRIPTION FACTOR S-II-RELATED PROTEIN 4. ).
          Length = 217

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 47  LKKSYDCVRNKVRKMDNPIMTPNKIQRLLNLAEDRSFQNARLREMSDDDMKRIAA 211
           +KK   C+R+KV  + NP  +  +   L      R F    + EM++ ++K++ A
Sbjct: 84  IKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRA 138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,677,540
Number of Sequences: 237096
Number of extensions: 1982874
Number of successful extensions: 4134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4134
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)