Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G21
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   3.5  
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    27   4.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   6.0  
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    26   6.0  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   8.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   8.0  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 265  VCSWVTHAATKGWVRADPQVGARLSHTSEKHPRAILGELS 384
            V S+ +   T  W+   PQ+ + LSH    H RAIL +++
Sbjct: 2989 VSSFKSEIPTWNWIPFIPQLLSALSHRESIHARAILIQIA 3028


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 296  FVAACVTQLQTQRGRSPTPHGVNL*RFCSTPRTNVPKGKR 177
            F AA  +       +SP P+G+      S  +TN P G++
Sbjct: 1110 FGAATPSAFNASASQSPAPNGIQFNLGSSNSQTNAPPGRK 1149


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 465 ISMQPVLPSDVHWGTGRXSRHRXHXPGRGXXG 560
           +S    L   V  G GR  +HR H  GRG  G
Sbjct: 5   VSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAG 36


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 412 DVVLNVANRKLFAHRVILSACSPYFRAMFT 501
           D+V      ++FAH+  L+A S YF++ F+
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFS 197


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 483 LPSDVHWGTGRXSRHRXHXPGRGXXG 560
           L   V  G GR  +HR H  GRG  G
Sbjct: 11  LRGHVSAGHGRIGKHRKHPGGRGKAG 36


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 221 RFCSTPRTNVPKGKRNI-YNKSQC 153
           R C TP TN+   K+NI Y +  C
Sbjct: 23  RLCFTPPTNLHNNKKNIFYTRYDC 46


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 319  QVGARLSHTSEKHPRAILGELSALRRHRELCDVV 420
            Q+  R+   SE   ++I  E    R++ ELCD++
Sbjct: 1137 QLSERIKEISEMLEQSIATEEKLRRKNSELCDII 1170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,759
Number of Sequences: 5004
Number of extensions: 46551
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)