Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G21
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      49   5e-08
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          37   3e-04
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 49.2 bits (112), Expect = 5e-08
 Identities = 28/79 (35%), Positives = 38/79 (48%)
 Frame = +1

Query: 364 AILGELSALRRHRELCDVVLNVANRKLFAHRVILSACSPYFRAMFTGELAXSRATEXTIR 543
           +I      LR   +  DV L    R L AHRV+LSACSPYFR +   +    +     ++
Sbjct: 17  SITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELL--KSTPCKHPVIVLQ 74

Query: 544 DVDXQAMXXLVEFCYTAHI 600
           DV    +  LVEF Y   +
Sbjct: 75  DVAFSDLHALVEFIYHGEV 93


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +1

Query: 412 DVVLNVANRKLFAHRVILSACSPYFRAMFTGELAXSRATEXTIRDVDXQAMXXLVEFCYT 591
           DV L      L AH+V+LSACS YF+ +          T    +DV    +  ++EF Y 
Sbjct: 37  DVTLACNEASLKAHKVVLSACSSYFQKLLLSN-PCKHPTIIMPQDVCFNDLKFIIEFVYR 95

Query: 592 AHI 600
             I
Sbjct: 96  GEI 98


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 444 EFPVSNVEHDIA*LTMTSQCG 382
           ++ +SN+EH+   L +TS  G
Sbjct: 505 DYDISNIEHEALLLVITSTFG 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,163
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)