Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G18
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -3

Query: 704 TGERTRELPGGTPGIFIVLSGFATSXLSVDFCDARQGGGAYGKTPATRPF 555
           T    + +  GTP  F + +    +   +D   +R+G      TPA   F
Sbjct: 618 TRSTEKRVSAGTPAAFNISTTIYENQNCLDASSSRRGSKIGSPTPAESTF 667


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 765 KRHASRRXKGGQVSGKRQGRNRRAH 691
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 601 RASQKSTLXSEVAXPDRTIKIPGVPPGSSLVRSPVPT 711
           +  +  T+ +  A  D T+K  G PP +      VPT
Sbjct: 74  KKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVPT 110


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 601 RASQKSTLXSEVAXPDRTIKIPGVPPGSSLVRSPVPT 711
           +  +  T+ +  A  D T+K  G PP +      VPT
Sbjct: 74  KKKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVPT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,098
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)