Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G17
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0245 - 23872901-23872906,23873567-23873600,23874497-238747...    31   1.6  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    29   6.5  

>04_04_0245 -
           23872901-23872906,23873567-23873600,23874497-23874765,
           23876691-23876741
          Length = 119

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 NERRVRSREMAQSECTNEEDKISKSPRGIFHR 289
           NE+ V  R MA+ E  +E +  + SP G+ HR
Sbjct: 50  NEQEVDKRVMAKGELADERESTATSPEGMGHR 81


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -3

Query: 245  RWYIRFEPFRDCVLFAXXXXXXXRFSEVIFAFFSLSFISH-C----MLNLPTYHKTTKPS 81
            +W +R E    CVL              +F FFS+    H C    ++N+  Y  T K  
Sbjct: 1018 KWMLRLETVSFCVLHGSSTDTCVMSVRFLFLFFSILLHQHWCFAYLLINMGIYLSTPKTD 1077

Query: 80   FRISDTAQLTKLKI 39
             + S+  +  KLK+
Sbjct: 1078 -KFSEDGENDKLKL 1090


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,758,084
Number of Sequences: 37544
Number of extensions: 361259
Number of successful extensions: 868
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)