Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G17
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical p...    50   3e-06
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical
           protein C18E9.2a protein.
          Length = 364

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +3

Query: 213 VAKWLKANVPTKKTKFLNHHVEYFTGTKAVDALFDFKMGDRQESSVHHKNRSD 371
           +AK+++ N PT  T F  + V YF+G KAVD L++ K G++ +     K R D
Sbjct: 24  IAKYIRFNCPTATTMFEGNEVHYFSGNKAVDTLWESKYGNKAKKDAMFKTRDD 76



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 586 IRLEMHMEQVFLDTVDAYVWITIRSPGTTGSAGSGRLWNDPV-CMFPLW 729
           ++L +H  Q F+D  D YVW+   +P      G   L    V C+FPLW
Sbjct: 160 VKLLVHEVQAFVDDKDVYVWVFDPTPLMKKIIGVLMLVGTIVGCLFPLW 208


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +2

Query: 419 RRSL*ASKN*KVNQKRRNPRRSVRAAMKRMERKAK--PAPAR 538
           RRS  ASK+    ++RR+P +S   A KR + ++K  PAPAR
Sbjct: 305 RRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPAR 346


>Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical
           protein C56A3.4 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 292 VPVKYSTW*FRNFVFFVGTFALSHFATAYSSLVGFSDSGGSPKSSLRFLVFLLSAIV 122
           +PV+ + W F NF  F         AT   +L  +     +P+ S  F+ ++L  +V
Sbjct: 36  IPVRITNWFFTNFPVFSSLSLFLFIATVLITLYVYRRLSSTPRES--FISYILYTVV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,997
Number of Sequences: 27780
Number of extensions: 309996
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)