Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G16
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.38 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   2.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 425 IKNSRCAIFDNSLFNAMKYG-NYLKHCSR 342
           I+NSRCA FDN   N   +  N  +H S+
Sbjct: 409 IRNSRCANFDNQDNNHYNHNHNQARHSSK 437


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 425 IKNSRCAIFDNSLFNAMKYGN 363
           IKN+RCA  +N   N  KY N
Sbjct: 412 IKNTRCAKSNNQNNNQNKYKN 432


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 572 RRYPGSFSLGPRDSSXPRSCLSTPCC 495
           RR PG  S GPRD        S P C
Sbjct: 55  RRNPGPGSKGPRDFPRSHRFKSLPRC 80


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 425 IKNSRCAIFDNSLFNAMKYGN 363
           I N+RCA  DN   N  K+ N
Sbjct: 578 IMNTRCANSDNQNNNQNKHNN 598


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 385 NSELSKMAHLEFFIDKYWNKYQGYTVIDETG 477
           NS    +   EF  + YW      T I+ETG
Sbjct: 49  NSNSGTINESEFNDENYWQCNDKKTDIEETG 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,252
Number of Sequences: 438
Number of extensions: 3356
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)