Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G15
(868 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 257 9e-69
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 37 0.021
AF045642-3|AAC02581.1| 588|Caenorhabditis elegans Hypothetical ... 31 1.4
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical pr... 28 9.9
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 9.9
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 9.9
U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical p... 28 9.9
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 257 bits (629), Expect = 9e-69
Identities = 110/167 (65%), Positives = 136/167 (81%)
Frame = +2
Query: 257 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 436
RGAPLA++ FRDPYK+KT K +A EG++TGQF++CG KA +++GN++PVG +PEGT +
Sbjct: 54 RGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTI 113
Query: 437 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 616
CN+E K GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGG
Sbjct: 114 CNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGG 173
Query: 617 RIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPXRASSRWWYHQHIG 757
R DKP+LKAGR+YHKYK KRN WP VRGVAMNP HQHIG
Sbjct: 174 RTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIG 220
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +3
Query: 96 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLE 194
MGR IR QRKGAG +F SH K RKGA KLR L+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLD 33
Score = 48.0 bits (109), Expect = 9e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +1
Query: 193 NYAERHGYIKGVVKDIIHDPG 255
+YAERHGYIKG+VKDIIHDPG
Sbjct: 33 DYAERHGYIKGLVKDIIHDPG 53
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 36.7 bits (81), Expect = 0.021
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 392 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 568
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP +
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217
Query: 569 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVK 673
L + VG ++ ID I + + + ++ K
Sbjct: 218 LHRTCMATVGRLSHAD-IDGKIFGSAQMHRRFGYK 251
>AF045642-3|AAC02581.1| 588|Caenorhabditis elegans Hypothetical
protein C17H12.2 protein.
Length = 588
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 701 VAMNPXRASSRWWYHQHIGKXXLSXEEHLLVAKXXYCCSQDGRIXEANRXKKEXXF 868
V +N R SS WW H +G+ + + + C G++ + + ++ F
Sbjct: 189 VRLNLSRLSSNWWAHSKLGELTVHQRQVARASYAVVCTDAPGKVSVSQKREESFRF 244
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 506 IGHNPDAKRTRVKLPSGAKKVL 571
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical
protein T05F1.8 protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -2
Query: 672 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 553
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = -3
Query: 665 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 486
C+C Q CQ +QQQ C C A+P QTV + C QS + Q
Sbjct: 37 CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
Query: 485 RHVPDDLYHPFSLQDC 438
P Q C
Sbjct: 94 SAPAVSQCQPMCQQQC 109
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = -3
Query: 665 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 486
C+C Q CQ +QQQ C C A+P QTV + C QS + Q
Sbjct: 37 CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
Query: 485 RHVPDDLYHPFSLQDC 438
P Q C
Sbjct: 94 SAPAVSQCQPMCQQQC 109
>U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical
protein C33F10.12 protein.
Length = 392
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -2
Query: 672 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 553
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,681,233
Number of Sequences: 27780
Number of extensions: 436021
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -