Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G14
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 27 0.55
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.94
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 1.5
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 30 2.2
09_02_0603 - 11150739-11150746,11150791-11151340 29 3.8
07_01_0682 - 5141194-5141251,5141526-5141839 29 3.8
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 6.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 6.7
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.1 bits (57), Expect(2) = 0.55
Identities = 11/36 (30%), Positives = 13/36 (36%)
Frame = +1
Query: 772 FFXPPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPP 879
++ PPPPPP PP PPP
Sbjct: 89 YYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPP 124
Score = 23.8 bits (49), Expect(2) = 0.55
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +1
Query: 685 PPPXXLXKXXPPXLXGGXGXXXXXXXXFXFFXPPPPPP 798
PPP PP F PPPPPP
Sbjct: 22 PPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPP 59
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPPXGGXXG 897
PPPPP PP G PPP GG G
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPP 879
PPPPPP PP G PPP
Sbjct: 635 PPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPP 667
Score = 26.2 bits (55), Expect(2) = 1.5
Identities = 11/33 (33%), Positives = 11/33 (33%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPP 879
PPPPPP PP PPP
Sbjct: 604 PPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPP 636
Score = 25.4 bits (53), Expect(2) = 4.2
Identities = 11/33 (33%), Positives = 11/33 (33%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPP 879
PPPPPP PP PPP
Sbjct: 605 PPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPP 637
Score = 23.0 bits (47), Expect(2) = 1.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 775 FXPPPPPP 798
F PPPPPP
Sbjct: 561 FSPPPPPP 568
Score = 22.2 bits (45), Expect(2) = 4.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 772 FFXPPPPPP 798
F PPPPPP
Sbjct: 561 FSPPPPPPP 569
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 683 PPPPXX*XXXPPPXWXGGGGXXXKXXXXFXFFXPPPP 793
PPPP PPP GGGG + PPPP
Sbjct: 11 PPPPP-----PPPFGRGGGGAGYPRGHKQLYAPPPPP 42
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 772 FFXPPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPP 876
F PPPPPP PP G F PP
Sbjct: 41 FGFPPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPP 75
>07_01_0682 - 5141194-5141251,5141526-5141839
Length = 123
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -1
Query: 884 PXGGGXKXXXPX--FXXGGXXXXXFXXXXXXGGGGGGXKKXK 765
P GGG P F GG F GGGGGG + K
Sbjct: 66 PLGGGAAGFGPFGGFGAGGGPFGGFGGGVGLGGGGGGFRPGK 107
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = -1
Query: 896 PXXPPXGGGXKXXXPXFXXGGXXXXXFXXXXXXGGGGGGXKKXKXXXFXXXXPXPPXKXG 717
P PP GG P GG GGGGG + PP G
Sbjct: 118 PSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGG 177
Query: 716 GXXXFNXXGGG 684
G GG
Sbjct: 178 GGGGPGRAPGG 188
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = +1
Query: 685 PPPXXLXKXXPPXLXGGXGXXXXXXXXFXFFXPPPPPPXXXXXXKXXXXXPPXXKXGXFX 864
PP PP G G PPPPP PP +
Sbjct: 1089 PPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGV 1148
Query: 865 XXPPPXGGXXG 897
PPP GG G
Sbjct: 1149 PPPPPVGGLGG 1159
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 683 PPPPXX*XXXPPPXWXGGGGXXXKXXXXFXFFXPPPP 793
PPPP PPP GGGG F+ PPP
Sbjct: 8 PPPPPPPPQHPPPPQAGGGGGG-------EFYRGPPP 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,383,359
Number of Sequences: 37544
Number of extensions: 580520
Number of successful extensions: 3343
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3031
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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