Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G14
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXG-XFXXXPPPXGGXXG 897
PPPPPP PP G PPP GG G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +1
Query: 685 PPPXXLXKXXPPXLXGGXGXXXXXXXXFXFFXPPPPPPXXXXXXKXXXXXPPXXKXGXFX 864
PPP PP G PPPPPP PP G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 865 XXPPP 879
PPP
Sbjct: 786 PPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXG-XFXXXPPPXGGXXG 897
PPPPPP PP G PPP GG G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +1
Query: 685 PPPXXLXKXXPPXLXGGXGXXXXXXXXFXFFXPPPPPPXXXXXXKXXXXXPPXXKXGXFX 864
PPP PP G PPPPPP PP G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Query: 865 XXPPP 879
PPP
Sbjct: 786 PPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXG-XFXXXPPPXGGXXG 897
PPPPPP PP G PPP GG G
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +1
Query: 685 PPPXXLXKXXPPXLXGGXGXXXXXXXXFXFFXPPPPPPXXXXXXKXXXXXPPXXKXGXFX 864
PPP PP G PPPPPP PP G
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Query: 865 XXPPP 879
PPP
Sbjct: 369 PPPPP 373
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 781 PPPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPPXGGXXG 897
PPPPP PP G PPP GG G
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMG 601
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 784 PPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPPXG 885
PPPPP PP + G PPP G
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 784 PPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPPXG 885
PPPPP PP + G PPP G
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 784 PPPPPXXXXXXKXXXXXPPXXKXGXFXXXPPPXG 885
PPPPP PP + G PPP G
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,189
Number of Sequences: 27780
Number of extensions: 292706
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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