Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.86 
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   3.5  

>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 255 KKTMSSIKKATDKIPLKLTNTISEPRQRTATVPKVATPKPKENKSV 392
           KK+ S  K+   ++ LK  + +  PR RT  +   +T K  EN+S+
Sbjct: 71  KKSSSFEKRDKRRVQLKEKSPLRTPRNRTQIIDARSTRKDTENESL 116


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +3

Query: 162 APRDVPKPTPKVQRIVGKTNQTKGRASPASVKKTMSSIKKATDKIPLKLTNTISEPRQRT 341
           A  + P P P  +R+   ++   G    A+   T S +KK     P K     +     +
Sbjct: 182 ASANAPLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNS 241

Query: 342 ATVPK-VATPKPKENKSVP 395
           + V    + P P +  + P
Sbjct: 242 SGVSSPTSVPPPVQRNTRP 260


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
 Frame = +3

Query: 135 NLGAKNVRMAP--RDVPKPTPKVQRIVGKTNQTKGRASPASVKKTMSSIKKATDKIPLKL 308
           +LG  +++  P  R+  +P P   +    T   K  ASP+++K+ +     +  + P  +
Sbjct: 16  SLGLGSLKSTPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASI 75

Query: 309 -----TNTISEPRQRTATVPKVATPKPKENKSVP 395
                ++ +S   Q+  + P V + KP +  ++P
Sbjct: 76  DAVASSSNVSLQSQQPLSKP-VVSSKPNQTTAMP 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,698
Number of Sequences: 5004
Number of extensions: 50122
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)