Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G13
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570     32   0.52 
01_07_0105 - 41104655-41104851,41105818-41107150                       30   2.8  
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899...    29   6.4  
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           29   6.4  
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365...    28   8.4  

>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
          Length = 508

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 326 ASSKDSNCTKSCNSKTKREQISSITKQHQQKCKESF 433
           AS +D  C   CN+K   +++  + K +  +C+E F
Sbjct: 364 ASDEDGECHSECNNKYGEDELYKVDKLYNMQCQELF 399


>01_07_0105 - 41104655-41104851,41105818-41107150
          Length = 509

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 216 TNQTKGRASPASVKKTMSSIKKATDKIPLKLTNTISEPRQRTATVP-KVATPKPKENKSV 392
           T     +A+PA+VKK +   KK   K        +++ +++   +P KVA  + KE+  V
Sbjct: 114 TTAAAAKATPAAVKKIVEEKKKEEAK---NKQEAVTDDKKKEKVIPTKVAIDEKKEDVVV 170

Query: 393 PL 398
           P+
Sbjct: 171 PM 172


>05_05_0292 +
           23889536-23889568,23889753-23889828,23889932-23889996,
           23890235-23890294,23890391-23890473,23890584-23890688,
           23890942-23891566,23892008-23892198,23892292-23892400,
           23892602-23892750,23892810-23892824,23893139-23893365,
           23893464-23893477
          Length = 583

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 104 LLKYFSYTIEKLGSKKRKDGSSRCPQTYA*SATNCRED*SD*RTRFAC 247
           LLK  + ++E +  K  KD    CPQ YA + T+  ED +D R+   C
Sbjct: 240 LLKLCNCSVE-MTRKSYKDACFGCPQAYA-NETDSSEDDTDDRSNDPC 285


>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 165 PRDVPKPTPKVQRIVGKTNQTKGRASPASVKKTMSSIKKATDKIPLKLTNTISEPRQRTA 344
           PR V +P  +VQ      NQ++ +  P S  KT   +   + KI     N+ S+ R+ +A
Sbjct: 131 PRQVHQPQMQVQVPARNLNQSQSQEFPISAPKTPVKVLSRSPKI--TSANSPSDQRKISA 188

Query: 345 T 347
           T
Sbjct: 189 T 189


>08_02_0034 -
           11435678-11435702,11435787-11435816,11436364-11436501,
           11436646-11436755,11436838-11436867,11437948-11437993,
           11438453-11438622,11439156-11439221,11439299-11439378,
           11440704-11440842,11440933-11441013,11441112-11441147,
           11441414-11441539,11442084-11442179,11443615-11443689,
           11444288-11444434,11445155-11445229,11445485-11445619,
           11445706-11445834,11446161-11446292,11446395-11446598
          Length = 689

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 277 LIDDIVFLTDAGEARPLV*LVFPTIR-CTLGVGLGTSRG 164
           +IDD+  +TDA   RP++ LV P ++ C +GV    SRG
Sbjct: 483 IIDDMKAMTDAAGDRPVI-LVNPRLKGCGVGVRGWGSRG 520


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,505,735
Number of Sequences: 37544
Number of extensions: 286254
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)