Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G10
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    31   0.29 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    29   0.90 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   3.6  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    27   3.6  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   4.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   4.8  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    26   8.4  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.4  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
 Frame = +3

Query: 465 SSNSPCDWMLN-LDQEPTSNLKL----EDVELFLHKTGPSNVQPKGYIQD-AVHKEKRP- 623
           +S+ P D  +N L   P+    L    E   +F  K+   N+    +I   AVH +    
Sbjct: 289 TSSIPIDEKVNFLQAHPSGEYLLAASNEKCYIFSLKSQVYNITVAQHITSLAVHPDGNLF 348

Query: 624 VMSIENGVIKGIKTEIESSDTKV---TCPMTHKENGYVQNAYFKVVNENTSSCIFVKDEN 794
           V  +ENG ++  +T   +  TK    + P+   + G  +N Y+ VV  N  S IF+ D  
Sbjct: 349 VAGLENGELRFFETSSGNELTKFGPHSSPVKTLQFG--ENGYWLVVTTNDDSDIFIWDLR 406

Query: 795 QIXLNDXIKLVVXQKNSKLEISSSVXPS 878
           +  L   I L        L+I+S +  S
Sbjct: 407 KSELVQKIPLQTKVAAVSLDITSQLLVS 434


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 528 LEDVELFLHKTGPSNVQPKGYIQDAVHKEK 617
           L D+EL LH +G  +V+PK   +D ++KE+
Sbjct: 378 LGDLELTLHLSGIVSVKPKDLNRDVLYKEE 407


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 240 FYGEDFLDELLSKDYWPSLLDGADASPSEILADA 341
           F  + FLD+ LS DY   L+  +D++ S +  DA
Sbjct: 311 FNADSFLDQTLSDDYEFGLITCSDSNESSMSNDA 344


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 VPMDEDILIDNKTGFYGEDFLDELLSK 278
           +PM + IL+ +KTG   E  L E++ K
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQK 232


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
 Frame = +3

Query: 501 DQEPTSNLKLEDVELFLHKTGPSNVQPKGYIQDAVHKEKRPVMSIENGVIKGIK--TEIE 674
           D E  +N K E  ++  H    +N        + VH+ + P  S E+     +K  T++ 
Sbjct: 556 DDEEETNTKDEFFDVDAHDNNHANKAEPSQTANNVHEIREPSFSSEHKPQPSLKTTTDVS 615

Query: 675 SSDTKVTCPMTHKENGYVQNAYFKVVNENTSS 770
           S +TK       K     Q   F    +N  S
Sbjct: 616 SPETKQNIADIRKTTLTDQTEEFTERRDNNGS 647


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 521 PET*RRGTIFT*NRSIKCTAKGLHTRCSSQRKKACHVD*KRCYQGYQD*D*KQRYKSNVP 700
           P+      +   N+S+K TAK L    SS  KKA +   K  + G      K  +K+N+P
Sbjct: 151 PQKGNNNNLLKENKSLKTTAKDLSDISSSSMKKANNSS-KPLFSG------KLTFKANIP 203

Query: 701 YDT 709
             T
Sbjct: 204 VPT 206


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 609 KEKRPVMSIENGVIKGIKTEIESSDTKVTCPMTHKENGYVQNAYFKVVNENTSSCIFVKD 788
           KE+   +S+ENG++ G++  +  SD  +    +H +N  + +  F ++N+N        D
Sbjct: 209 KERITAISLENGLLGGVQKGV--SDIILAGLESHLKN--ILSRCFSILNKNIRQKNTEND 264

Query: 789 ENQIXLND 812
                +ND
Sbjct: 265 AAGFTIND 272


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 588 YIQDAVHKEKRPVMSIENGVIKGIKTEIESSDTKVTCPMTHKENGYVQNA 737
           +++D  +K ++PV+ +E+   K     I     K  C    +++ +VQ A
Sbjct: 521 FVEDRANKTRKPVVQVEHAASKLENVHILCDYCKHKCSNIMEQDWFVQLA 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,972
Number of Sequences: 5004
Number of extensions: 63261
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)