Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G10
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0206 + 2507827-2508705,2508844-2509902                           29   5.0  
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867...    29   5.0  
11_01_0560 - 4413174-4414469                                           28   8.8  

>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 271 YQRTTGLHYWMEQMHRPVKF*QMQLQFLYHLYHLC 375
           Y+    LHY  ++ HR  +  ++ LQ+ + L+H+C
Sbjct: 182 YRNNQLLHYLQDRDHRIREEEELSLQYAHSLHHIC 216


>03_05_0868 +
           28385066-28385478,28386050-28386167,28386365-28386726,
           28389308-28389406,28389485-28389890
          Length = 465

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 252 DFLDELLSKDYW--PSLLDGADASPSEILADAA 344
           DFL++L +K Y+  P+L   ADA+  E+ A AA
Sbjct: 65  DFLEKLRAKGYFEQPTLASRADAAEGEVAATAA 97


>11_01_0560 - 4413174-4414469
          Length = 431

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 471 NSPCDWMLNLDQEPTSNLKLE--DVELFLHKTGPS 569
           + P D +LN D     ++  E  DVELFL + GPS
Sbjct: 36  DDPLDQVLNFDSSDFGHVFFESLDVELFLPRGGPS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,147,473
Number of Sequences: 37544
Number of extensions: 357653
Number of successful extensions: 782
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)