Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G09
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 258 FFFLRLCYIAVVNNYL 211
           F FL L   AVVNNY+
Sbjct: 286 FVFLSLMEFAVVNNYM 301


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 247 SPVLHRCRQ*LLVHFVQLLP 188
           SPV HR  + + V F+Q+LP
Sbjct: 327 SPVTHRMARWVRVVFIQVLP 346


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 301 HNLVNGKRPYDYPMSLAHLTVKYNRKMYGKY 393
           HN V GK    +  SL +  VK  R   GK+
Sbjct: 162 HNSVTGKTTACFEPSLDYCVVKIPRWDLGKF 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,591
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)