Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G07
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.62 
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   2.5  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   4.4  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   7.6  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 443 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVV---KLVEYETD 613
           K RR + +E ED++   +KS N  + + ED+KN   +   +    N VV   KL++ +T 
Sbjct: 21  KNRRRQFQE-EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTP 79

Query: 614 PEVLQRRQXXIDYGKN 661
              +Q  +   ++ +N
Sbjct: 80  LSSIQDLEGFREFMEN 95


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 497 KSMNSRTHSGEDSKNRK--KLKSDVENEGNLVVKLVEYETD 613
           K +NS   + E+S  ++    KSD E E ++  K  EY+ D
Sbjct: 87  KELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDED 127


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 443 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEV 622
           +K+RLE E    ++    +    R    ++ + RKK   + E +    ++L+E +   E 
Sbjct: 104 EKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163

Query: 623 LQRR 634
            QRR
Sbjct: 164 EQRR 167


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 452 RLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNL 583
           RL+H +S+    + D+  N+   S  + +N KK  S++EN GN+
Sbjct: 78  RLKHTQSD----LIDRFKNANLKSVNE-ENLKKFFSELENHGNI 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,749
Number of Sequences: 5004
Number of extensions: 49295
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)