Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_G07
         (838 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71188-1|CAA94918.1|  270|Homo sapiens histone RNA hairpin-bindi...    39   0.026
U75679-1|AAB97091.1|  270|Homo sapiens histone stem-loop binding...    39   0.026
BT007433-1|AAP36101.1|  270|Homo sapiens stem-loop (histone) bin...    39   0.026
BC015703-1|AAH15703.1|  270|Homo sapiens stem-loop (histone) bin...    39   0.026
BC014908-1|AAH14908.1|  270|Homo sapiens stem-loop (histone) bin...    39   0.026

>Z71188-1|CAA94918.1|  270|Homo sapiens histone RNA hairpin-binding
           protein protein.
          Length = 270

 Score = 38.7 bits (86), Expect = 0.026
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 455 LEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRR 634
           +E +E   ++         +    +  + RK      +++ ++     ++ETD  VL RR
Sbjct: 79  VEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRR 138

Query: 635 QXXIDYGKNTVGVSK 679
           Q  I+YGKNT+   +
Sbjct: 139 QKQINYGKNTIAYDR 153


>U75679-1|AAB97091.1|  270|Homo sapiens histone stem-loop binding
           protein protein.
          Length = 270

 Score = 38.7 bits (86), Expect = 0.026
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 455 LEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRR 634
           +E +E   ++         +    +  + RK      +++ ++     ++ETD  VL RR
Sbjct: 79  VEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRR 138

Query: 635 QXXIDYGKNTVGVSK 679
           Q  I+YGKNT+   +
Sbjct: 139 QKQINYGKNTIAYDR 153


>BT007433-1|AAP36101.1|  270|Homo sapiens stem-loop (histone)
           binding protein protein.
          Length = 270

 Score = 38.7 bits (86), Expect = 0.026
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 455 LEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRR 634
           +E +E   ++         +    +  + RK      +++ ++     ++ETD  VL RR
Sbjct: 79  VEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRR 138

Query: 635 QXXIDYGKNTVGVSK 679
           Q  I+YGKNT+   +
Sbjct: 139 QKQINYGKNTIAYDR 153


>BC015703-1|AAH15703.1|  270|Homo sapiens stem-loop (histone)
           binding protein protein.
          Length = 270

 Score = 38.7 bits (86), Expect = 0.026
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 455 LEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRR 634
           +E +E   ++         +    +  + RK      +++ ++     ++ETD  VL RR
Sbjct: 79  VEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRR 138

Query: 635 QXXIDYGKNTVGVSK 679
           Q  I+YGKNT+   +
Sbjct: 139 QKQINYGKNTIAYDR 153


>BC014908-1|AAH14908.1|  270|Homo sapiens stem-loop (histone)
           binding protein protein.
          Length = 270

 Score = 38.7 bits (86), Expect = 0.026
 Identities = 18/75 (24%), Positives = 35/75 (46%)
 Frame = +2

Query: 455 LEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRR 634
           +E +E   ++         +    +  + RK      +++ ++     ++ETD  VL RR
Sbjct: 79  VEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRR 138

Query: 635 QXXIDYGKNTVGVSK 679
           Q  I+YGKNT+   +
Sbjct: 139 QKQINYGKNTIAYDR 153


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,026,895
Number of Sequences: 237096
Number of extensions: 1365680
Number of successful extensions: 2327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2327
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)