Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G06
(950 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.40
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.6
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 30 2.1
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 30 2.1
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 30 2.1
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 6.5
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 6.5
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 28 8.5
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.40
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 644 GXFPXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNLVP 823
G P PP P PP P+ PP PPS P P P P + P
Sbjct: 135 GSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP-PRTPPSPIPP 193
Query: 824 P 826
P
Sbjct: 194 P 194
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Frame = +2
Query: 719 PPXXXKXPRLXPPXKPPSXRP--LXPXPAXXPGNLVPPFXPXG-XSGGPFPIXXXP 877
PP + PR PP PP RP P P P P P P PI P
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +2
Query: 695 PXXQRVXXPPXXXKXPRLXPPXKPPS--XRPLXPXPAXXPGNLVPPFXPXGXSGGPFP 862
P RV P P PP PPS RP P+ P N PP P P P
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRN--PPRTPPSPIPPPPP 196
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Frame = +2
Query: 653 PXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNL---VP 823
P G PP+ P + PP P PP P P P PG P
Sbjct: 716 PPGLPPITGGPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 824 PFXPXGXSGGPFP 862
P P G GGP P
Sbjct: 774 PPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Frame = +2
Query: 653 PXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNL---VP 823
P G PP+ P + PP P PP P P P PG P
Sbjct: 716 PPGLPPITGGPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 824 PFXPXGXSGGPFP 862
P P G GGP P
Sbjct: 774 PPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Frame = +2
Query: 653 PXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNL---VP 823
P G PP+ P + PP P PP P P P PG P
Sbjct: 299 PPGLPPITGGPPPPPPPGGL--PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Query: 824 PFXPXGXSGGPFP 862
P P G GGP P
Sbjct: 357 PPPPGGFKGGPPP 369
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 740 PRLXPPXKPPSXRPLXPXPAXXPGNLVPPFXPXGXSGGPFPIXXXPXXVSP 892
P PP PP L P P P PP +G P P+ P SP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPP---PPPTMSKAPTGVPLPVPPPPPLFSP 1385
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = +2
Query: 719 PPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNLVPPFXPXGXSGGPFPIXXXPXXVSPXX 898
PP R P P RP P P PG P P G G P P P +P
Sbjct: 749 PPLPMSDYRPHPSGPSPVPRPA-PAP---PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Query: 899 G*GXF 913
G G +
Sbjct: 805 GGGMY 809
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = +2
Query: 719 PPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNLVPPFXPXGXSGGPFPIXXXPXXVSPXX 898
PP R P P RP P P PG P P G G P P P +P
Sbjct: 749 PPLPMSDYRPHPSGPSPVPRPA-PAP---PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Query: 899 G*GXF 913
G G +
Sbjct: 805 GGGMY 809
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = +2
Query: 719 PPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNLVPPFXPXGXSGGPFPIXXXPXXVSPXX 898
PP R P P RP P P PG P P G G P P P +P
Sbjct: 749 PPLPMSDYRPHPSGPSPVPRPA-PAP---PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Query: 899 G*GXF 913
G G +
Sbjct: 805 GGGMY 809
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/65 (32%), Positives = 23/65 (35%)
Frame = +2
Query: 719 PPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNLVPPFXPXGXSGGPFPIXXXPXXVSPXX 898
PP R P P RP P P PG P P G G P P P +P
Sbjct: 749 PPLPMSDYRPHPSGPSPVPRPA-PAP---PGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Query: 899 G*GXF 913
G G +
Sbjct: 805 GGGMY 809
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 834 GXKGGTRFPGKXAGXGXXGRXEGGXXGGKSLGXL 733
G GG F G G G G GG GG ++G L
Sbjct: 59 GGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSL 92
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Frame = +2
Query: 695 PXXQRVXXPPXXXKXPRLXPPXK--PPSXRPLXPXPAXX---PGNLVPPFXPXGXSGGP 856
P R PP P PP + PP + P P PG + PP P S GP
Sbjct: 302 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/89 (25%), Positives = 27/89 (30%)
Frame = +2
Query: 596 TKRPXKGQNP*XGXVXGXFPXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSX 775
T RP P G + PP+ P PP P + P PP
Sbjct: 238 TGRPGYQPPPLMGMAQSGYQGQYPPVPP-----PPPSVTPMPPPMPPTPGMTPRPPPPPS 292
Query: 776 RPLXPXPAXXPGNLVPPFXPXGXSGGPFP 862
+ P P P P P G G P P
Sbjct: 293 SGMWPPPPPPPPGRTP--GPPGMPGMPPP 319
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Frame = +2
Query: 695 PXXQRVXXPPXXXKXPRLXPPXK--PPSXRPLXPXPAXX---PGNLVPPFXPXGXSGGP 856
P R PP P PP + PP + P P PG + PP P S GP
Sbjct: 312 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/89 (25%), Positives = 27/89 (30%)
Frame = +2
Query: 596 TKRPXKGQNP*XGXVXGXFPXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSX 775
T RP P G + PP+ P PP P + P PP
Sbjct: 248 TGRPGYQPPPLMGMAQSGYQGQYPPVPP-----PPPSVTPMPPPMPPTPGMTPRPPPPPS 302
Query: 776 RPLXPXPAXXPGNLVPPFXPXGXSGGPFP 862
+ P P P P P G G P P
Sbjct: 303 SGMWPPPPPPPPGRTP--GPPGMPGMPPP 329
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 755 PXKPPSXRPLXPXPAXXPGNLVPPFXPXGXSGGPFP 862
P +P + P P PA PG P P G GGP P
Sbjct: 153 PCEPSTPPPCQPCPAGPPGPPGPDGTP-GEPGGPGP 187
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +2
Query: 632 GXVXGXFPXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXP 790
G + G F G P KIR + PP P + PP P+ P
Sbjct: 85 GGLGGLFANGMPMKPSENKIRRATTSIGPPPTASSAPPVPPPAPVPAVEGKKP 137
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +2
Query: 632 GXVXGXFPXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXP 790
G + G F G P KIR + PP P + PP P+ P
Sbjct: 85 GGLGGLFANGMPMKPSENKIRRATTSIGPPPTASSAPPVPPPAPVPAVEGKKP 137
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/58 (25%), Positives = 21/58 (36%)
Frame = +2
Query: 653 PXGXPPLNKXXKIRPXXQRVXXPPXXXKXPRLXPPXKPPSXRPLXPXPAXXPGNLVPP 826
P G PP+ + ++ + P P + PP PP P P G V P
Sbjct: 209 PQGAPPMVQQQQMPMPPKPTFAHPGPSMGPPMGPPMGPPMGHPQAPQYGQNYGQPVAP 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,344,042
Number of Sequences: 27780
Number of extensions: 182473
Number of successful extensions: 724
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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