Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G02
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 37 0.022
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 33 0.36
07_01_1201 - 11419851-11419913,11420090-11420311 30 1.9
05_04_0142 - 18372751-18373338 29 4.4
03_06_0149 - 31987183-31987630,31987813-31987874 29 4.4
12_02_1188 + 26801833-26802225 29 5.8
06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741... 29 5.8
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 5.8
01_03_0308 - 14883728-14884120 29 5.8
11_06_0012 + 19251085-19251666 28 7.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 7.7
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 723 RKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 616
R R RR GG+V+G+ R+RR GA++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 644 RELSRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 516
R LSRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 22 RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 582 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 686
Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>05_04_0142 - 18372751-18373338
Length = 195
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -2
Query: 786 TQPSLERTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 619
T S ++Y T + R E+GG G++QGR R+A A + P
Sbjct: 36 TSGSAASSSYPSTSGSAGSSSSGRRVEEEEQGGGGGGRKQGRRRKAVARAIRERLP 91
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 729 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 619
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 693 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 595
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>06_01_0964 -
7417158-7417517,7417596-7417868,7418400-7418810,
7419270-7419347
Length = 373
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 682 YLSAFLPSGSVALSHSSRCRYLSSGVGRSLQAG 780
Y S P SV L HSS C + S V L+AG
Sbjct: 139 YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 351 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 506
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +2
Query: 542 RPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREA 712
R P + S + + +R +I G + PS A L+R C +CPP E
Sbjct: 48 RSPFPTTSPSMIDEQTT--ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREER 105
Query: 713 WR 718
WR
Sbjct: 106 WR 107
>11_06_0012 + 19251085-19251666
Length = 193
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 768 RTTYTRTEIPTA*AMRKRHASRREKGGQVSGK 673
RTT T E A R+RH RR+ GG G+
Sbjct: 69 RTTATAVEAQQA-LRRRRHGGRRDSGGGAGGR 99
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,223,207
Number of Sequences: 37544
Number of extensions: 479921
Number of successful extensions: 1432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -